Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 AC068587.6-202ENST00000641839 5619 ntBASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 SLC25A1P3-201ENST00000395415 828 ntBASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 KRT18P65-201ENST00000439811 1286 ntBASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF540Q8NDQ6 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 AC093458.2-201ENST00000623150 629 ntBASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF540Q8NDQ6 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 NORAD-201ENST00000565493 5339 ntBASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF540Q8NDQ6 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms