Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 RARRES2P8-201ENST00000566335 367 ntBASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 AC060834.1-201ENST00000443027 2032 ntBASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 AC092474.2-201ENST00000424288 719 ntBASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 AL135744.1-201ENST00000565098 629 ntBASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 AC004835.2-201ENST00000603762 682 ntBASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC60Q8IWA6 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.77■□□□□ 0.59
CCDC60Q8IWA6 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC60Q8IWA6 TUBB8P12-201ENST00000308911 1335 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 TUBB7P-202ENST00000428444 1305 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 TUBB8P7-204ENST00000567960 1332 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 PCDHB17P-201ENST00000539533 2393 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 AL139400.1-201ENST00000366220 510 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 TFAMP1-201ENST00000412727 736 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 AC243562.1-201ENST00000560672 389 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 AC093520.2-201ENST00000561830 333 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 AP001350.2-201ENST00000625104 1094 ntBASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC60Q8IWA6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms