Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SH3RF1Q7Z6J0 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SH3RF1Q7Z6J0 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SH3RF1Q7Z6J0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SH3RF1Q7Z6J0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 AC003669.1-201ENST00000334569 611 ntBASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 AC074386.1-202ENST00000463561 864 ntBASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 OR7E47P-204ENST00000575924 449 ntBASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 AC004835.2-201ENST00000603762 682 ntBASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 FLJ38576-201ENST00000623820 2459 ntBASIC19.39■□□□□ 0.69
SH3RF1Q7Z6J0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 MRPL20P1-201ENST00000400819 433 ntBASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 RHOQP3-201ENST00000437982 621 ntBASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 ACTG1P14-201ENST00000446382 1122 ntBASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 AC092902.6-201ENST00000641783 218 ntBASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SH3RF1Q7Z6J0 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms