Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC12.8□□□□□ -0.36
FOXA3P55318 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 AC112698.1-201ENST00000510299 916 ntBASIC12.8□□□□□ -0.36
FOXA3P55318 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC12.8□□□□□ -0.36
FOXA3P55318 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC12.8□□□□□ -0.36
FOXA3P55318 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.8□□□□□ -0.36
FOXA3P55318 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 STX3-203ENST00000529177 1571 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 AC006538.1-201ENST00000567905 1585 ntBASIC12.8□□□□□ -0.36
FOXA3P55318 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
FOXA3P55318 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
FOXA3P55318 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
FOXA3P55318 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
FOXA3P55318 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA3P55318 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 AC096633.1-201ENST00000422446 749 ntBASIC12.79□□□□□ -0.36
FOXA3P55318 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
FOXA3P55318 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
FOXA3P55318 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC12.79□□□□□ -0.36
FOXA3P55318 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 GXYLT1P4-201ENST00000613576 1192 ntBASIC12.79□□□□□ -0.36
FOXA3P55318 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 ADM-208ENST00000534464 1640 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
FOXA3P55318 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
FOXA3P55318 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA3P55318 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
FOXA3P55318 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
FOXA3P55318 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA3P55318 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 AL135905.2-201ENST00000584934 1404 ntBASIC12.79□□□□□ -0.36
FOXA3P55318 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA3P55318 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.78□□□□□ -0.36
FOXA3P55318 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 EGFEM1P-202ENST00000431685 1563 ntBASIC12.78□□□□□ -0.36
FOXA3P55318 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms