Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 AC120498.9-201ENST00000339021 3867 ntBASIC20.85■□□□□ 0.93
NUP98P52948 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.85■□□□□ 0.93
NUP98P52948 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.85■□□□□ 0.93
NUP98P52948 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP98P52948 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
NUP98P52948 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
NUP98P52948 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 MTND6P24-201ENST00000440466 518 ntBASIC20.85■□□□□ 0.93
NUP98P52948 MEIS3P1-201ENST00000495167 958 ntBASIC20.85■□□□□ 0.93
NUP98P52948 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.85■□□□□ 0.93
NUP98P52948 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.85■□□□□ 0.93
NUP98P52948 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.85■□□□□ 0.93
NUP98P52948 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
NUP98P52948 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 AC006277.1-201ENST00000624348 1610 ntBASIC20.85■□□□□ 0.93
NUP98P52948 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP98P52948 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NUP98P52948 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.84■□□□□ 0.93
NUP98P52948 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP98P52948 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.84■□□□□ 0.93
NUP98P52948 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.84■□□□□ 0.93
NUP98P52948 AL353705.2-201ENST00000428243 662 ntBASIC20.84■□□□□ 0.93
NUP98P52948 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.84■□□□□ 0.93
NUP98P52948 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NUP98P52948 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP98P52948 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP98P52948 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP98P52948 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NUP98P52948 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NUP98P52948 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
NUP98P52948 AC005034.1-201ENST00000426657 489 ntBASIC20.83■□□□□ 0.93
NUP98P52948 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.83■□□□□ 0.93
NUP98P52948 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.83■□□□□ 0.93
NUP98P52948 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.83■□□□□ 0.93
NUP98P52948 AL132655.2-201ENST00000596276 594 ntBASIC20.83■□□□□ 0.93
NUP98P52948 AC008738.7-201ENST00000609744 511 ntBASIC20.83■□□□□ 0.93
NUP98P52948 CECR7-204ENST00000609932 568 ntTSL 2 BASIC20.83■□□□□ 0.93
NUP98P52948 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NUP98P52948 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
NUP98P52948 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NUP98P52948 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NUP98P52948 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NUP98P52948 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.83■□□□□ 0.93
NUP98P52948 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NUP98P52948 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NUP98P52948 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NUP98P52948 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.83■□□□□ 0.92
NUP98P52948 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NUP98P52948 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.83■□□□□ 0.92
NUP98P52948 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
NUP98P52948 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.83■□□□□ 0.92
NUP98P52948 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NUP98P52948 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.83■□□□□ 0.92
NUP98P52948 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.83■□□□□ 0.92
NUP98P52948 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.83■□□□□ 0.92
NUP98P52948 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NUP98P52948 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NUP98P52948 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
NUP98P52948 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
NUP98P52948 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.82■□□□□ 0.92
NUP98P52948 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 CETN4P-206ENST00000642099 2168 ntBASIC20.82■□□□□ 0.92
NUP98P52948 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
NUP98P52948 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.82■□□□□ 0.92
NUP98P52948 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 EDF1-203ENST00000371649 790 ntTSL 2 BASIC20.82■□□□□ 0.92
NUP98P52948 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.82■□□□□ 0.92
NUP98P52948 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.82■□□□□ 0.92
NUP98P52948 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.82■□□□□ 0.92
NUP98P52948 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 AC093724.1-201ENST00000448659 1027 ntBASIC20.82■□□□□ 0.92
NUP98P52948 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.82■□□□□ 0.92
NUP98P52948 AC010336.2-201ENST00000564226 506 ntBASIC20.82■□□□□ 0.92
NUP98P52948 WASH4P-201ENST00000564273 1246 ntBASIC20.82■□□□□ 0.92
NUP98P52948 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.82■□□□□ 0.92
NUP98P52948 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
NUP98P52948 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.82■□□□□ 0.92
NUP98P52948 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.82■□□□□ 0.92
NUP98P52948 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
NUP98P52948 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
NUP98P52948 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
NUP98P52948 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms