Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.58■□□□□ 0.56
CLCN3P51790 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.58■□□□□ 0.56
CLCN3P51790 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CLCN3P51790 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CLCN3P51790 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.57■□□□□ 0.56
CLCN3P51790 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.57■□□□□ 0.56
CLCN3P51790 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CLCN3P51790 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CLCN3P51790 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.57■□□□□ 0.56
CLCN3P51790 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CLCN3P51790 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 AL627223.1-201ENST00000416693 442 ntBASIC18.57■□□□□ 0.56
CLCN3P51790 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.57■□□□□ 0.56
CLCN3P51790 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 CYMP-203ENST00000474680 1263 ntBASIC18.57■□□□□ 0.56
CLCN3P51790 RN7SL589P-201ENST00000481268 310 ntBASIC18.57■□□□□ 0.56
CLCN3P51790 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.57■□□□□ 0.56
CLCN3P51790 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CLCN3P51790 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.57■□□□□ 0.56
CLCN3P51790 AC124947.2-201ENST00000547118 1133 ntBASIC18.57■□□□□ 0.56
CLCN3P51790 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.57■□□□□ 0.56
CLCN3P51790 AL161645.1-201ENST00000622716 1255 ntBASIC18.57■□□□□ 0.56
CLCN3P51790 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CLCN3P51790 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CLCN3P51790 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.57■□□□□ 0.56
CLCN3P51790 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCN3P51790 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.56■□□□□ 0.56
CLCN3P51790 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.56■□□□□ 0.56
CLCN3P51790 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.56■□□□□ 0.56
CLCN3P51790 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.56■□□□□ 0.56
CLCN3P51790 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.56■□□□□ 0.56
CLCN3P51790 AC092474.2-201ENST00000424288 719 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 AL645939.2-201ENST00000427340 991 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 AC005237.2-201ENST00000434368 219 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 AL592309.1-201ENST00000443127 649 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.56■□□□□ 0.56
CLCN3P51790 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.56■□□□□ 0.56
CLCN3P51790 AC109322.1-201ENST00000524499 1264 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.56■□□□□ 0.56
CLCN3P51790 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CLCN3P51790 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.56■□□□□ 0.56
CLCN3P51790 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CLCN3P51790 AC004449.1-201ENST00000564240 433 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 CYP2A7P1-201ENST00000595391 815 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
CLCN3P51790 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CLCN3P51790 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CLCN3P51790 AC108860.2-201ENST00000562760 2183 ntBASIC18.56■□□□□ 0.56
CLCN3P51790 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CLCN3P51790 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCN3P51790 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
CLCN3P51790 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CLCN3P51790 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 AKAP8P1-201ENST00000434743 1349 ntBASIC18.55■□□□□ 0.56
CLCN3P51790 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.55■□□□□ 0.56
CLCN3P51790 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CLCN3P51790 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.55■□□□□ 0.56
CLCN3P51790 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms