Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.66■□□□□ 0.26
SHMT2P34897 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.66■□□□□ 0.26
SHMT2P34897 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.66■□□□□ 0.26
SHMT2P34897 AC145285.3-201ENST00000564603 959 ntBASIC16.66■□□□□ 0.26
SHMT2P34897 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.66■□□□□ 0.26
SHMT2P34897 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 Z83851.2-201ENST00000609564 659 ntBASIC16.66■□□□□ 0.26
SHMT2P34897 GGTLC5P-201ENST00000617623 998 ntBASIC16.66■□□□□ 0.26
SHMT2P34897 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.66■□□□□ 0.26
SHMT2P34897 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 AC011270.2-201ENST00000624293 2550 ntBASIC16.66■□□□□ 0.26
SHMT2P34897 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SHMT2P34897 AC116353.5-201ENST00000638148 1699 ntBASIC16.65■□□□□ 0.26
SHMT2P34897 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 ZNF259P1-201ENST00000407656 1365 ntBASIC16.65■□□□□ 0.26
SHMT2P34897 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SHMT2P34897 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 AC093525.9-201ENST00000624961 1746 ntBASIC16.65■□□□□ 0.26
SHMT2P34897 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.65■□□□□ 0.26
SHMT2P34897 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.65■□□□□ 0.26
SHMT2P34897 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 UNC93B6-202ENST00000528242 690 ntBASIC16.65■□□□□ 0.26
SHMT2P34897 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.65■□□□□ 0.26
SHMT2P34897 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
SHMT2P34897 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
SHMT2P34897 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SHMT2P34897 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.65■□□□□ 0.26
SHMT2P34897 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHMT2P34897 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
SHMT2P34897 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
SHMT2P34897 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.64■□□□□ 0.25
SHMT2P34897 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 AC104109.2-201ENST00000602919 1418 ntBASIC16.64■□□□□ 0.25
SHMT2P34897 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 AL162727.3-201ENST00000635661 2787 ntBASIC16.64■□□□□ 0.25
SHMT2P34897 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SHMT2P34897 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.64■□□□□ 0.25
SHMT2P34897 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 AC108751.1-201ENST00000490852 363 ntBASIC16.64■□□□□ 0.25
SHMT2P34897 IGHV3-65-201ENST00000523210 341 ntBASIC16.64■□□□□ 0.25
SHMT2P34897 SLC25A1P1-201ENST00000528351 927 ntBASIC16.64■□□□□ 0.25
SHMT2P34897 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.64■□□□□ 0.25
SHMT2P34897 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 AF228730.7-201ENST00000641842 219 ntBASIC16.64■□□□□ 0.25
SHMT2P34897 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.64■□□□□ 0.25
SHMT2P34897 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.64■□□□□ 0.25
SHMT2P34897 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 EGFEM1P-202ENST00000431685 1563 ntBASIC16.64■□□□□ 0.25
SHMT2P34897 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHMT2P34897 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms