Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNU1-129P-201ENST00000384064 167 ntBASIC19.04■□□□□ 0.64
CIITAP33076 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.04■□□□□ 0.64
CIITAP33076 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CIITAP33076 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.04■□□□□ 0.64
CIITAP33076 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.04■□□□□ 0.64
CIITAP33076 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 AC109635.5-201ENST00000533593 962 ntBASIC19.04■□□□□ 0.64
CIITAP33076 U1.21-201ENST00000580816 167 ntBASIC19.04■□□□□ 0.64
CIITAP33076 AC010327.4-202ENST00000591484 748 ntBASIC19.04■□□□□ 0.64
CIITAP33076 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.04■□□□□ 0.64
CIITAP33076 AL139011.1-202ENST00000642063 584 ntBASIC19.04■□□□□ 0.64
CIITAP33076 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
CIITAP33076 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CIITAP33076 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CIITAP33076 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.03■□□□□ 0.64
CIITAP33076 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 HTR5BP-201ENST00000430851 1154 ntBASIC19.03■□□□□ 0.64
CIITAP33076 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 ALG1L5P-201ENST00000482043 771 ntBASIC19.03■□□□□ 0.64
CIITAP33076 AC005829.1-201ENST00000570002 483 ntBASIC19.03■□□□□ 0.64
CIITAP33076 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.03■□□□□ 0.64
CIITAP33076 AC091812.2-201ENST00000619081 385 ntBASIC19.03■□□□□ 0.64
CIITAP33076 AC092902.6-201ENST00000641783 218 ntBASIC19.03■□□□□ 0.64
CIITAP33076 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 AL391256.1-201ENST00000443260 1855 ntBASIC19.03■□□□□ 0.64
CIITAP33076 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.03■□□□□ 0.64
CIITAP33076 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CIITAP33076 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CIITAP33076 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.02■□□□□ 0.64
CIITAP33076 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.02■□□□□ 0.64
CIITAP33076 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.02■□□□□ 0.64
CIITAP33076 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.02■□□□□ 0.64
CIITAP33076 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.02■□□□□ 0.64
CIITAP33076 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CIITAP33076 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.02■□□□□ 0.64
CIITAP33076 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.02■□□□□ 0.64
CIITAP33076 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.02■□□□□ 0.64
CIITAP33076 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.02■□□□□ 0.64
CIITAP33076 AL009183.1-201ENST00000603760 355 ntBASIC19.02■□□□□ 0.64
CIITAP33076 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CIITAP33076 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
CIITAP33076 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CIITAP33076 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CIITAP33076 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CIITAP33076 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
CIITAP33076 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CIITAP33076 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
CIITAP33076 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CIITAP33076 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CIITAP33076 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.01■□□□□ 0.63
CIITAP33076 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.01■□□□□ 0.63
CIITAP33076 AC092474.2-201ENST00000424288 719 ntBASIC19.01■□□□□ 0.63
CIITAP33076 FAM58CP-201ENST00000435741 640 ntBASIC19.01■□□□□ 0.63
CIITAP33076 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms