Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
PTPN4P29074 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 AC068418.2-201ENST00000577309 3703 ntBASIC17.11■□□□□ 0.33
PTPN4P29074 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
PTPN4P29074 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.11■□□□□ 0.33
PTPN4P29074 AC113404.2-201ENST00000507884 177 ntBASIC17.11■□□□□ 0.33
PTPN4P29074 AC106795.1-205ENST00000512851 1056 ntBASIC17.11■□□□□ 0.33
PTPN4P29074 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.11■□□□□ 0.33
PTPN4P29074 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.11■□□□□ 0.33
PTPN4P29074 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PTPN4P29074 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PTPN4P29074 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PTPN4P29074 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN4P29074 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.1■□□□□ 0.33
PTPN4P29074 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PTPN4P29074 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 AC079328.2-201ENST00000561241 3354 ntBASIC17.1■□□□□ 0.33
PTPN4P29074 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.1■□□□□ 0.33
PTPN4P29074 AP000347.1-202ENST00000435868 847 ntBASIC17.1■□□□□ 0.33
PTPN4P29074 SAPCD2P3-201ENST00000455031 850 ntBASIC17.1■□□□□ 0.33
PTPN4P29074 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.1■□□□□ 0.33
PTPN4P29074 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.1■□□□□ 0.33
PTPN4P29074 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PTPN4P29074 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PTPN4P29074 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
PTPN4P29074 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.1■□□□□ 0.33
PTPN4P29074 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PTPN4P29074 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN4P29074 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 LYSMD4-203ENST00000378904 2122 ntBASIC17.09■□□□□ 0.33
PTPN4P29074 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PTPN4P29074 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
PTPN4P29074 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.09■□□□□ 0.33
PTPN4P29074 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN4P29074 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.09■□□□□ 0.33
PTPN4P29074 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
PTPN4P29074 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 SLC25A6P4-201ENST00000586535 553 ntBASIC17.09■□□□□ 0.33
PTPN4P29074 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.09■□□□□ 0.33
PTPN4P29074 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.09■□□□□ 0.33
PTPN4P29074 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.09■□□□□ 0.33
PTPN4P29074 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PTPN4P29074 REXO1L6P-202ENST00000619970 1078 ntBASIC17.09■□□□□ 0.33
PTPN4P29074 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.09■□□□□ 0.33
PTPN4P29074 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN4P29074 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PTPN4P29074 LINC02012-201ENST00000608206 1725 ntBASIC17.09■□□□□ 0.33
PTPN4P29074 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN4P29074 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms