Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC21.04■□□□□ 0.96
COL5A3P25940 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
COL5A3P25940 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.04■□□□□ 0.96
COL5A3P25940 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC21.04■□□□□ 0.96
COL5A3P25940 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
COL5A3P25940 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 AC112492.5-201ENST00000421897 457 ntBASIC21.04■□□□□ 0.96
COL5A3P25940 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 GNAQP1-201ENST00000444815 1067 ntBASIC21.04■□□□□ 0.96
COL5A3P25940 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC21.04■□□□□ 0.96
COL5A3P25940 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC21.04■□□□□ 0.96
COL5A3P25940 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC21.04■□□□□ 0.96
COL5A3P25940 AC044860.1-202ENST00000559481 777 ntBASIC21.04■□□□□ 0.96
COL5A3P25940 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
COL5A3P25940 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC21.03■□□□□ 0.96
COL5A3P25940 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.03■□□□□ 0.96
COL5A3P25940 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC21.03■□□□□ 0.96
COL5A3P25940 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.03■□□□□ 0.96
COL5A3P25940 IMPDH1P4-201ENST00000445028 1534 ntBASIC21.03■□□□□ 0.96
COL5A3P25940 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC21.03■□□□□ 0.96
COL5A3P25940 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 DPM2-202ENST00000373110 738 ntTSL 2 BASIC21.03■□□□□ 0.96
COL5A3P25940 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC21.03■□□□□ 0.96
COL5A3P25940 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC21.03■□□□□ 0.96
COL5A3P25940 NAA38-207ENST00000576861 556 ntTSL 3 BASIC21.03■□□□□ 0.96
COL5A3P25940 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC21.03■□□□□ 0.96
COL5A3P25940 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL5A3P25940 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC21.03■□□□□ 0.96
COL5A3P25940 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC21.03■□□□□ 0.96
COL5A3P25940 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC21.03■□□□□ 0.96
COL5A3P25940 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A3P25940 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC21.02■□□□□ 0.96
COL5A3P25940 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC21.02■□□□□ 0.96
COL5A3P25940 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A3P25940 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A3P25940 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC21.02■□□□□ 0.96
COL5A3P25940 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A3P25940 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.02■□□□□ 0.96
COL5A3P25940 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A3P25940 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC21.02■□□□□ 0.96
COL5A3P25940 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A3P25940 MAX-210ENST00000555419 765 ntTSL 5 BASIC21.02■□□□□ 0.96
COL5A3P25940 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.02■□□□□ 0.96
COL5A3P25940 AC099568.2-201ENST00000609194 695 ntBASIC21.02■□□□□ 0.96
COL5A3P25940 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC21.02■□□□□ 0.96
COL5A3P25940 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
COL5A3P25940 AC007541.1-201ENST00000570282 1469 ntBASIC21.02■□□□□ 0.96
COL5A3P25940 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A3P25940 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.02■□□□□ 0.96
COL5A3P25940 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A3P25940 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC21.02■□□□□ 0.96
COL5A3P25940 RHBDF1P1-201ENST00000427504 1941 ntBASIC21.02■□□□□ 0.95
COL5A3P25940 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL5A3P25940 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL5A3P25940 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.01■□□□□ 0.95
COL5A3P25940 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
COL5A3P25940 AC098614.1-201ENST00000368528 745 ntBASIC21.01■□□□□ 0.95
COL5A3P25940 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A3P25940 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC21.01■□□□□ 0.95
COL5A3P25940 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A3P25940 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.01■□□□□ 0.95
COL5A3P25940 TTTY23B-201ENST00000442790 549 ntBASIC21.01■□□□□ 0.95
COL5A3P25940 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A3P25940 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.01■□□□□ 0.95
COL5A3P25940 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
COL5A3P25940 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC21.01■□□□□ 0.95
COL5A3P25940 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
COL5A3P25940 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
COL5A3P25940 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A3P25940 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC21.01■□□□□ 0.95
COL5A3P25940 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A3P25940 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL5A3P25940 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A3P25940 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A3P25940 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
COL5A3P25940 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC21.01■□□□□ 0.95
COL5A3P25940 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC21.01■□□□□ 0.95
COL5A3P25940 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC21.01■□□□□ 0.95
COL5A3P25940 AC023310.3-201ENST00000557027 670 ntBASIC21.01■□□□□ 0.95
COL5A3P25940 AC100756.1-201ENST00000562736 682 ntBASIC21.01■□□□□ 0.95
COL5A3P25940 AC138749.3-201ENST00000567691 622 ntBASIC21.01■□□□□ 0.95
COL5A3P25940 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC21.01■□□□□ 0.95
COL5A3P25940 AC116165.1-201ENST00000611806 668 ntBASIC21.01■□□□□ 0.95
COL5A3P25940 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC21.01■□□□□ 0.95
COL5A3P25940 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
COL5A3P25940 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL5A3P25940 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL5A3P25940 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC21■□□□□ 0.95
COL5A3P25940 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms