Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH3P22223 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH3P22223 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CDH3P22223 KRT18P27-201ENST00000427733 1299 ntBASIC16.71■□□□□ 0.27
CDH3P22223 PMS2P1-201ENST00000431037 1228 ntBASIC16.71■□□□□ 0.27
CDH3P22223 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.71■□□□□ 0.27
CDH3P22223 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.71■□□□□ 0.27
CDH3P22223 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.71■□□□□ 0.27
CDH3P22223 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH3P22223 AL139424.1-201ENST00000607572 797 ntBASIC16.71■□□□□ 0.27
CDH3P22223 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH3P22223 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH3P22223 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH3P22223 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH3P22223 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
CDH3P22223 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CDH3P22223 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CDH3P22223 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CDH3P22223 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CDH3P22223 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.7■□□□□ 0.26
CDH3P22223 AC073621.1-201ENST00000392730 636 ntBASIC16.7■□□□□ 0.26
CDH3P22223 ELK2BP-201ENST00000415014 1224 ntBASIC16.7■□□□□ 0.26
CDH3P22223 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.7■□□□□ 0.26
CDH3P22223 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.7■□□□□ 0.26
CDH3P22223 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.7■□□□□ 0.26
CDH3P22223 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.7■□□□□ 0.26
CDH3P22223 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 Z83851.2-201ENST00000609564 659 ntBASIC16.7■□□□□ 0.26
CDH3P22223 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH3P22223 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CDH3P22223 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH3P22223 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.69■□□□□ 0.26
CDH3P22223 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 AC006504.4-201ENST00000592118 1568 ntBASIC16.69■□□□□ 0.26
CDH3P22223 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CDH3P22223 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.69■□□□□ 0.26
CDH3P22223 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 MIR574-201ENST00000385209 96 ntBASIC16.69■□□□□ 0.26
CDH3P22223 MIR940-201ENST00000401276 94 ntBASIC16.69■□□□□ 0.26
CDH3P22223 LINC00982-205ENST00000420957 435 ntBASIC16.69■□□□□ 0.26
CDH3P22223 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.69■□□□□ 0.26
CDH3P22223 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.69■□□□□ 0.26
CDH3P22223 KRT18P58-201ENST00000527480 1120 ntBASIC16.69■□□□□ 0.26
CDH3P22223 UNC93B6-202ENST00000528242 690 ntBASIC16.69■□□□□ 0.26
CDH3P22223 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.69■□□□□ 0.26
CDH3P22223 AC145285.3-201ENST00000564603 959 ntBASIC16.69■□□□□ 0.26
CDH3P22223 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CDH3P22223 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CDH3P22223 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH3P22223 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms