Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSH3P20585 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 NKILA-202ENST00000614771 2598 ntBASIC16.91■□□□□ 0.3
MSH3P20585 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
MSH3P20585 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.91■□□□□ 0.3
MSH3P20585 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.91■□□□□ 0.3
MSH3P20585 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.91■□□□□ 0.3
MSH3P20585 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 IGHV3-65-201ENST00000523210 341 ntBASIC16.91■□□□□ 0.3
MSH3P20585 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.91■□□□□ 0.3
MSH3P20585 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.91■□□□□ 0.3
MSH3P20585 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 TERC-201ENST00000602385 541 ntBASIC16.91■□□□□ 0.3
MSH3P20585 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.91■□□□□ 0.3
MSH3P20585 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
MSH3P20585 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.91■□□□□ 0.3
MSH3P20585 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
MSH3P20585 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
MSH3P20585 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
MSH3P20585 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MSH3P20585 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH3P20585 FRMD8P1-201ENST00000440433 1524 ntBASIC16.91■□□□□ 0.3
MSH3P20585 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.91■□□□□ 0.3
MSH3P20585 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
MSH3P20585 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH3P20585 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.9■□□□□ 0.3
MSH3P20585 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.9■□□□□ 0.3
MSH3P20585 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
MSH3P20585 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSH3P20585 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSH3P20585 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
MSH3P20585 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.9■□□□□ 0.3
MSH3P20585 RNA5SP415-201ENST00000517246 115 ntBASIC16.9■□□□□ 0.3
MSH3P20585 UNC93B6-202ENST00000528242 690 ntBASIC16.9■□□□□ 0.3
MSH3P20585 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH3P20585 AC124947.2-201ENST00000547118 1133 ntBASIC16.9■□□□□ 0.3
MSH3P20585 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.9■□□□□ 0.3
MSH3P20585 AC120114.3-201ENST00000611923 658 ntBASIC16.9■□□□□ 0.3
MSH3P20585 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH3P20585 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSH3P20585 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
MSH3P20585 IL9RP2-201ENST00000423948 1312 ntBASIC16.9■□□□□ 0.3
MSH3P20585 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 AC092053.1-201ENST00000605787 1936 ntBASIC16.9■□□□□ 0.3
MSH3P20585 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
MSH3P20585 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH3P20585 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
MSH3P20585 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
MSH3P20585 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH3P20585 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms