Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.47■□□□□ 0.23
LDLRP01130 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LDLRP01130 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
LDLRP01130 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.47■□□□□ 0.23
LDLRP01130 AF186996.4-201ENST00000467186 377 ntBASIC16.47■□□□□ 0.23
LDLRP01130 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 GPR32P1-201ENST00000601788 811 ntBASIC16.47■□□□□ 0.23
LDLRP01130 AC010240.3-201ENST00000607688 395 ntBASIC16.47■□□□□ 0.23
LDLRP01130 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 AL391005.1-201ENST00000623953 2435 ntBASIC16.47■□□□□ 0.23
LDLRP01130 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LDLRP01130 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.46■□□□□ 0.23
LDLRP01130 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.46■□□□□ 0.23
LDLRP01130 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 AC005104.2-201ENST00000427818 678 ntBASIC16.46■□□□□ 0.23
LDLRP01130 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.46■□□□□ 0.23
LDLRP01130 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 GUSBP12-201ENST00000513727 720 ntBASIC16.46■□□□□ 0.23
LDLRP01130 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.46■□□□□ 0.23
LDLRP01130 AC124864.1-201ENST00000623408 392 ntBASIC16.46■□□□□ 0.23
LDLRP01130 AC148477.8-201ENST00000624298 468 ntBASIC16.46■□□□□ 0.23
LDLRP01130 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 AC243591.1-201ENST00000452967 1364 ntBASIC16.46■□□□□ 0.23
LDLRP01130 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.46■□□□□ 0.23
LDLRP01130 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LDLRP01130 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LDLRP01130 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
LDLRP01130 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LDLRP01130 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 AC026691.1-201ENST00000602502 2017 ntBASIC16.45■□□□□ 0.22
LDLRP01130 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 RN7SL606P-201ENST00000472779 293 ntBASIC16.45■□□□□ 0.22
LDLRP01130 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.45■□□□□ 0.22
LDLRP01130 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms