Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
SIX3O95343 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX3O95343 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX3O95343 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 AP002414.1-201ENST00000391405 1147 ntBASIC16.62■□□□□ 0.25
SIX3O95343 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX3O95343 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 KRT16P4-201ENST00000453883 522 ntBASIC16.62■□□□□ 0.25
SIX3O95343 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX3O95343 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX3O95343 AL732292.2-201ENST00000609649 430 ntBASIC16.62■□□□□ 0.25
SIX3O95343 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX3O95343 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.62■□□□□ 0.25
SIX3O95343 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX3O95343 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX3O95343 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX3O95343 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX3O95343 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SIX3O95343 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.61■□□□□ 0.25
SIX3O95343 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.61■□□□□ 0.25
SIX3O95343 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 AC064862.7-201ENST00000604520 867 ntBASIC16.61■□□□□ 0.25
SIX3O95343 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 AL590787.1-201ENST00000568856 1315 ntBASIC16.61■□□□□ 0.25
SIX3O95343 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX3O95343 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SIX3O95343 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SIX3O95343 LINC02199-201ENST00000506655 2702 ntBASIC16.61■□□□□ 0.25
SIX3O95343 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX3O95343 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX3O95343 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.6■□□□□ 0.25
SIX3O95343 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.6■□□□□ 0.25
SIX3O95343 AL353135.1-201ENST00000606729 504 ntBASIC16.6■□□□□ 0.25
SIX3O95343 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.6■□□□□ 0.25
SIX3O95343 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SIX3O95343 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
SIX3O95343 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.6■□□□□ 0.25
SIX3O95343 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.6■□□□□ 0.25
SIX3O95343 ALOX12P2-203ENST00000570921 1945 ntBASIC16.6■□□□□ 0.25
SIX3O95343 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 AC008894.3-201ENST00000624324 3103 ntBASIC16.6■□□□□ 0.25
SIX3O95343 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX3O95343 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms