Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RPL7P3-201ENST00000441388 714 ntBASIC28.58■■■□□ 2.17
CUX2O14529 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC28.58■■■□□ 2.17
CUX2O14529 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC28.58■■■□□ 2.17
CUX2O14529 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CUX2O14529 NEU3-202ENST00000526068 431 ntTSL 2 BASIC28.58■■■□□ 2.17
CUX2O14529 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC28.58■■■□□ 2.17
CUX2O14529 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC28.58■■■□□ 2.17
CUX2O14529 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC28.58■■■□□ 2.17
CUX2O14529 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC28.58■■■□□ 2.17
CUX2O14529 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC28.58■■■□□ 2.17
CUX2O14529 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CUX2O14529 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC28.58■■■□□ 2.17
CUX2O14529 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC28.58■■■□□ 2.17
CUX2O14529 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC28.57■■■□□ 2.16
CUX2O14529 BX323043.1-201ENST00000641006 1765 ntBASIC28.57■■■□□ 2.16
CUX2O14529 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CUX2O14529 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC28.57■■■□□ 2.16
CUX2O14529 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC28.57■■■□□ 2.16
CUX2O14529 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CUX2O14529 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CUX2O14529 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CUX2O14529 MPV17-206ENST00000402722 827 ntTSL 3 BASIC28.57■■■□□ 2.16
CUX2O14529 AL355334.1-201ENST00000417713 215 ntBASIC28.57■■■□□ 2.16
CUX2O14529 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC28.57■■■□□ 2.16
CUX2O14529 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CUX2O14529 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC28.57■■■□□ 2.16
CUX2O14529 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC28.57■■■□□ 2.16
CUX2O14529 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC28.57■■■□□ 2.16
CUX2O14529 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC28.57■■■□□ 2.16
CUX2O14529 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC28.57■■■□□ 2.16
CUX2O14529 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CUX2O14529 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC28.56■■■□□ 2.16
CUX2O14529 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CUX2O14529 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
CUX2O14529 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC28.56■■■□□ 2.16
CUX2O14529 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC28.56■■■□□ 2.16
CUX2O14529 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CUX2O14529 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CUX2O14529 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
CUX2O14529 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
CUX2O14529 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CUX2O14529 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC28.55■■■□□ 2.16
CUX2O14529 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC28.55■■■□□ 2.16
CUX2O14529 MIR5189-201ENST00000577370 114 ntBASIC28.55■■■□□ 2.16
CUX2O14529 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC28.55■■■□□ 2.16
CUX2O14529 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC28.55■■■□□ 2.16
CUX2O14529 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC28.55■■■□□ 2.16
CUX2O14529 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
CUX2O14529 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC28.54■■■□□ 2.16
CUX2O14529 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC28.54■■■□□ 2.16
CUX2O14529 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC28.54■■■□□ 2.16
CUX2O14529 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC28.54■■■□□ 2.16
CUX2O14529 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC28.54■■■□□ 2.16
CUX2O14529 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC28.54■■■□□ 2.16
CUX2O14529 AC009542.2-202ENST00000619004 1067 ntBASIC28.54■■■□□ 2.16
CUX2O14529 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
CUX2O14529 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC28.54■■■□□ 2.16
CUX2O14529 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CUX2O14529 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC28.53■■■□□ 2.16
CUX2O14529 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CUX2O14529 AL589987.1-201ENST00000453380 819 ntBASIC28.53■■■□□ 2.16
CUX2O14529 UPF3AP2-201ENST00000457924 1132 ntBASIC28.53■■■□□ 2.16
CUX2O14529 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
CUX2O14529 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
CUX2O14529 ACTG1P17-201ENST00000558391 1119 ntBASIC28.53■■■□□ 2.16
CUX2O14529 PAM16-204ENST00000571941 674 ntTSL 3 BASIC28.53■■■□□ 2.16
CUX2O14529 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC28.53■■■□□ 2.16
CUX2O14529 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CUX2O14529 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC28.53■■■□□ 2.16
CUX2O14529 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
CUX2O14529 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC28.53■■■□□ 2.16
CUX2O14529 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
CUX2O14529 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CUX2O14529 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
CUX2O14529 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
CUX2O14529 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms