Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 RPS3-201ENST00000278572 907 ntTSL 3 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 UPF3AP2-201ENST00000457924 1132 ntBASIC12.96□□□□□ -0.33
COL6A5A8TX70 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 AL512361.1-201ENST00000554200 418 ntBASIC12.96□□□□□ -0.33
COL6A5A8TX70 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 BID-204ENST00000399767 2129 ntTSL 2 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 KRT8P22-201ENST00000562317 1415 ntBASIC12.96□□□□□ -0.33
COL6A5A8TX70 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL6A5A8TX70 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
COL6A5A8TX70 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC12.96□□□□□ -0.34
COL6A5A8TX70 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
COL6A5A8TX70 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL6A5A8TX70 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
COL6A5A8TX70 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL6A5A8TX70 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL6A5A8TX70 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL6A5A8TX70 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL6A5A8TX70 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 AL589987.1-201ENST00000453380 819 ntBASIC12.95□□□□□ -0.34
COL6A5A8TX70 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.95□□□□□ -0.34
COL6A5A8TX70 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
COL6A5A8TX70 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 PTGES2-AS1-201ENST00000443493 2100 ntBASIC12.95□□□□□ -0.34
COL6A5A8TX70 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL6A5A8TX70 AL020996.1-203ENST00000536896 2307 ntBASIC12.95□□□□□ -0.34
COL6A5A8TX70 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms