Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 OR13I1P-201ENST00000609811 1264 ntBASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 AC004706.3-202ENST00000621574 984 ntBASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 AF228730.7-201ENST00000641842 219 ntBASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 IFNL4P1-201ENST00000607083 540 ntBASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 LINC00226-202ENST00000618204 1052 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 KRT8P49-201ENST00000604166 1432 ntBASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS9D1Q9Y2B5 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 AKR1C7P-201ENST00000305623 895 ntBASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS9D1Q9Y2B5 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms