Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS28Q9UK41 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS28Q9UK41 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS28Q9UK41 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 AC087163.2-201ENST00000457299 853 ntBASIC17.48■□□□□ 0.39
VPS28Q9UK41 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS28Q9UK41 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS28Q9UK41 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 PGAM5P1-201ENST00000518923 814 ntBASIC17.47■□□□□ 0.39
VPS28Q9UK41 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 OR7E47P-204ENST00000575924 449 ntBASIC17.47■□□□□ 0.39
VPS28Q9UK41 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS28Q9UK41 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS28Q9UK41 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 IGLL3P-201ENST00000412472 434 ntBASIC17.46■□□□□ 0.39
VPS28Q9UK41 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 KRT18P2-201ENST00000447938 1258 ntBASIC17.46■□□□□ 0.39
VPS28Q9UK41 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 AC040169.1-201ENST00000565382 521 ntBASIC17.46■□□□□ 0.39
VPS28Q9UK41 AC018845.2-201ENST00000568326 409 ntBASIC17.46■□□□□ 0.39
VPS28Q9UK41 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS28Q9UK41 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
VPS28Q9UK41 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
VPS28Q9UK41 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS28Q9UK41 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS28Q9UK41 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS28Q9UK41 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS28Q9UK41 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
VPS28Q9UK41 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms