Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 PRYP5-201ENST00000451909 266 ntBASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 AC104819.1-201ENST00000504587 486 ntBASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMA1Q9UHB6 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 AL162727.3-201ENST00000635661 2787 ntBASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 KRT18P21-201ENST00000515767 1272 ntBASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 AP000867.3-201ENST00000524675 377 ntBASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 AC012615.1-201ENST00000565797 1299 ntBASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIMA1Q9UHB6 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 AL139384.1-201ENST00000612143 3047 ntBASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 PKD1P1-201ENST00000458669 6805 ntBASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 AP005117.1-201ENST00000584346 1413 ntBASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 AC007950.2-201ENST00000615045 2347 ntBASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LIMA1Q9UHB6 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMA1Q9UHB6 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMA1Q9UHB6 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMA1Q9UHB6 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMA1Q9UHB6 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMA1Q9UHB6 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms