Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 AL021920.2-201ENST00000624828 1351 ntBASIC17.05■□□□□ 0.32
DKK3Q9UBP4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 RPSAP43-201ENST00000402237 625 ntBASIC17.05■□□□□ 0.32
DKK3Q9UBP4 GPX1P2-201ENST00000429271 606 ntBASIC17.05■□□□□ 0.32
DKK3Q9UBP4 AC074386.1-202ENST00000463561 864 ntBASIC17.05■□□□□ 0.32
DKK3Q9UBP4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 MIR3687-2-201ENST00000577708 61 ntBASIC17.05■□□□□ 0.32
DKK3Q9UBP4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 MIR3687-1-201ENST00000614492 61 ntBASIC17.05■□□□□ 0.32
DKK3Q9UBP4 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
DKK3Q9UBP4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 AC091167.2-201ENST00000579581 588 ntBASIC17.04■□□□□ 0.32
DKK3Q9UBP4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 AC009053.2-201ENST00000563701 2365 ntBASIC17.04■□□□□ 0.32
DKK3Q9UBP4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 AL353732.1-201ENST00000569618 1459 ntBASIC17.04■□□□□ 0.32
DKK3Q9UBP4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
DKK3Q9UBP4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms