Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC018695.7-201ENST00000624587 2492 ntBASIC18.21■□□□□ 0.5
SIX2Q9NPC8 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.21■□□□□ 0.5
SIX2Q9NPC8 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
SIX2Q9NPC8 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 BCL2-203ENST00000589955 5011 ntBASIC18.2■□□□□ 0.5
SIX2Q9NPC8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 RPS15P9-201ENST00000494093 319 ntBASIC18.2■□□□□ 0.5
SIX2Q9NPC8 OR7E14P-202ENST00000530490 1290 ntBASIC18.2■□□□□ 0.5
SIX2Q9NPC8 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 AC012640.2-201ENST00000561606 901 ntBASIC18.2■□□□□ 0.5
SIX2Q9NPC8 MPDU1-223ENST00000582151 728 ntBASIC18.2■□□□□ 0.5
SIX2Q9NPC8 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.2■□□□□ 0.5
SIX2Q9NPC8 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX2Q9NPC8 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 PCDH8P1-201ENST00000428983 2773 ntBASIC18.19■□□□□ 0.5
SIX2Q9NPC8 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 SLC22A20-204ENST00000530038 1673 ntBASIC18.19■□□□□ 0.5
SIX2Q9NPC8 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 AC148477.8-201ENST00000624298 468 ntBASIC18.19■□□□□ 0.5
SIX2Q9NPC8 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SIX2Q9NPC8 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 PMS2P1-201ENST00000431037 1228 ntBASIC18.18■□□□□ 0.5
SIX2Q9NPC8 AC079781.3-201ENST00000449110 356 ntBASIC18.18■□□□□ 0.5
SIX2Q9NPC8 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 AL121912.1-201ENST00000603683 238 ntBASIC18.18■□□□□ 0.5
SIX2Q9NPC8 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 AL671710.1-201ENST00000610245 2349 ntBASIC18.18■□□□□ 0.5
SIX2Q9NPC8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms