Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
VTA1Q9NP79 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.89■□□□□ 0.61
VTA1Q9NP79 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.89■□□□□ 0.61
VTA1Q9NP79 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTA1Q9NP79 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 GNAS-203ENST00000306120 1878 ntBASIC18.88■□□□□ 0.61
VTA1Q9NP79 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 IGHV3-42-201ENST00000520410 361 ntBASIC18.88■□□□□ 0.61
VTA1Q9NP79 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 AL138918.1-201ENST00000568306 659 ntBASIC18.88■□□□□ 0.61
VTA1Q9NP79 AL390754.1-201ENST00000619088 582 ntBASIC18.88■□□□□ 0.61
VTA1Q9NP79 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VTA1Q9NP79 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VTA1Q9NP79 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.87■□□□□ 0.61
VTA1Q9NP79 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 KRT18P34-201ENST00000488218 1270 ntBASIC18.87■□□□□ 0.61
VTA1Q9NP79 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VTA1Q9NP79 AC105233.2-201ENST00000523697 349 ntBASIC18.87■□□□□ 0.61
VTA1Q9NP79 AF228730.5-201ENST00000530288 346 ntBASIC18.87■□□□□ 0.61
VTA1Q9NP79 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
VTA1Q9NP79 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC134043.2-201ENST00000624206 2238 ntBASIC18.86■□□□□ 0.61
VTA1Q9NP79 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC142381.1-201ENST00000426099 345 ntBASIC18.86■□□□□ 0.61
VTA1Q9NP79 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 TSPY16P-201ENST00000449843 468 ntBASIC18.86■□□□□ 0.61
VTA1Q9NP79 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC097493.3-201ENST00000509725 367 ntBASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC124947.2-201ENST00000547118 1133 ntBASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC190387.1-201ENST00000551683 408 ntBASIC18.86■□□□□ 0.61
VTA1Q9NP79 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 AC073389.1-201ENST00000595595 795 ntBASIC18.86■□□□□ 0.61
VTA1Q9NP79 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.86■□□□□ 0.61
VTA1Q9NP79 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTA1Q9NP79 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms