Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 AL022326.1-202ENST00000641533 845 ntBASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM54Q9BYV2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 PCDHB19P-201ENST00000570871 2371 ntBASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 SCARNA2-201ENST00000458748 420 ntBASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 PCDHA14-201ENST00000506751 2298 ntBASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM54Q9BYV2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 LINC00982-205ENST00000420957 435 ntBASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 BX005266.1-201ENST00000473402 457 ntBASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 NKAPP1-205ENST00000585790 367 ntBASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 AL355877.3-201ENST00000622820 899 ntBASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM54Q9BYV2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
TRIM54Q9BYV2 NCF1C-201ENST00000438382 1427 ntBASIC16.79■□□□□ 0.28
TRIM54Q9BYV2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms