Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.49■□□□□ 0.39
CDX2Q99626 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.49■□□□□ 0.39
CDX2Q99626 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CDX2Q99626 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.49■□□□□ 0.39
CDX2Q99626 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.49■□□□□ 0.39
CDX2Q99626 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.49■□□□□ 0.39
CDX2Q99626 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.49■□□□□ 0.39
CDX2Q99626 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.49■□□□□ 0.39
CDX2Q99626 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.49■□□□□ 0.39
CDX2Q99626 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.49■□□□□ 0.39
CDX2Q99626 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.49■□□□□ 0.39
CDX2Q99626 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.49■□□□□ 0.39
CDX2Q99626 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.49■□□□□ 0.39
CDX2Q99626 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CDX2Q99626 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CDX2Q99626 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.49■□□□□ 0.39
CDX2Q99626 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.49■□□□□ 0.39
CDX2Q99626 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.49■□□□□ 0.39
CDX2Q99626 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CDX2Q99626 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CDX2Q99626 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.48■□□□□ 0.39
CDX2Q99626 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 HINT2P1-201ENST00000419438 481 ntBASIC17.48■□□□□ 0.39
CDX2Q99626 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.48■□□□□ 0.39
CDX2Q99626 RPL13AP20-201ENST00000459725 609 ntBASIC17.48■□□□□ 0.39
CDX2Q99626 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.48■□□□□ 0.39
CDX2Q99626 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.48■□□□□ 0.39
CDX2Q99626 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.48■□□□□ 0.39
CDX2Q99626 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.48■□□□□ 0.39
CDX2Q99626 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.48■□□□□ 0.39
CDX2Q99626 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.48■□□□□ 0.39
CDX2Q99626 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
CDX2Q99626 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CDX2Q99626 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CDX2Q99626 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDX2Q99626 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.48■□□□□ 0.39
CDX2Q99626 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CDX2Q99626 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.47■□□□□ 0.39
CDX2Q99626 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 BCRP2-202ENST00000447763 634 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.47■□□□□ 0.39
CDX2Q99626 BCRP6-201ENST00000510112 632 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 BCRP7-201ENST00000511549 544 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 AP001258.2-201ENST00000529891 490 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 MIR4706-201ENST00000582134 82 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.47■□□□□ 0.39
CDX2Q99626 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.47■□□□□ 0.39
CDX2Q99626 AC020765.3-201ENST00000613051 740 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.47■□□□□ 0.39
CDX2Q99626 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDX2Q99626 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms