Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 ELK2BP-201ENST00000415014 1224 ntBASIC16.09■□□□□ 0.17
TM9SF4Q92544 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 SNHG9-202ENST00000564014 471 ntBASIC16.09■□□□□ 0.17
TM9SF4Q92544 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF4Q92544 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
TM9SF4Q92544 AL049757.1-201ENST00000616842 1596 ntBASIC16.09■□□□□ 0.17
TM9SF4Q92544 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TM9SF4Q92544 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TM9SF4Q92544 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TM9SF4Q92544 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.08■□□□□ 0.17
TM9SF4Q92544 UBALD1-205ENST00000590891 2641 ntBASIC16.08■□□□□ 0.17
TM9SF4Q92544 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 VN2R19P-201ENST00000442399 1052 ntBASIC16.08■□□□□ 0.16
TM9SF4Q92544 AP006288.1-201ENST00000446065 395 ntBASIC16.08■□□□□ 0.16
TM9SF4Q92544 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 RPS15P9-201ENST00000494093 319 ntBASIC16.08■□□□□ 0.16
TM9SF4Q92544 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 AC008667.4-201ENST00000607370 168 ntBASIC16.08■□□□□ 0.16
TM9SF4Q92544 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
TM9SF4Q92544 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TM9SF4Q92544 AC132938.5-201ENST00000624980 1813 ntBASIC16.08■□□□□ 0.16
TM9SF4Q92544 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 DDX43P3-201ENST00000441064 443 ntBASIC16.07■□□□□ 0.16
TM9SF4Q92544 DNAJB3-202ENST00000449667 1266 ntBASIC16.07■□□□□ 0.16
TM9SF4Q92544 AC108073.2-201ENST00000464002 357 ntBASIC16.07■□□□□ 0.16
TM9SF4Q92544 STK19B-204ENST00000512515 211 ntBASIC16.07■□□□□ 0.16
TM9SF4Q92544 IGHV3-65-201ENST00000523210 341 ntBASIC16.07■□□□□ 0.16
TM9SF4Q92544 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TM9SF4Q92544 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.07■□□□□ 0.16
TM9SF4Q92544 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms