Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 RBM7-207ENST00000544582 692 ntTSL 3 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 AF228730.6-201ENST00000641497 218 ntBASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 AC084121.3-201ENST00000641716 218 ntBASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 AC105233.6-201ENST00000642093 218 ntBASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 AC092171.3-201ENST00000610122 2651 ntBASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
NKX2-3Q8TAU0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NKX2-3Q8TAU0 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NKX2-3Q8TAU0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NKX2-3Q8TAU0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NKX2-3Q8TAU0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.02■□□□□ 0.79
NKX2-3Q8TAU0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
NKX2-3Q8TAU0 AC011676.5-201ENST00000624864 2660 ntBASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 AC078925.2-201ENST00000624013 1973 ntBASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 AGGF1P2-201ENST00000426656 2106 ntBASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NKX2-3Q8TAU0 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 COPE-202ENST00000349893 948 ntTSL 2 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 METTL26-204ENST00000397665 558 ntTSL 2 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 ATP6V0CP3-201ENST00000417255 467 ntBASIC20■□□□□ 0.79
NKX2-3Q8TAU0 RNA5SP421-201ENST00000516864 134 ntBASIC20■□□□□ 0.79
NKX2-3Q8TAU0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 PDPK2P-202ENST00000562415 1191 ntBASIC20■□□□□ 0.79
NKX2-3Q8TAU0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 AC092919.2-201ENST00000623631 1645 ntBASIC20■□□□□ 0.79
NKX2-3Q8TAU0 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX2-3Q8TAU0 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 FLJ38576-201ENST00000623820 2459 ntBASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 SNX33P1-201ENST00000592116 1762 ntBASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 GK-202ENST00000378941 458 ntTSL 3 BASIC19.99■□□□□ 0.79
NKX2-3Q8TAU0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms