Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 SLC25A6P5-201ENST00000435663 894 ntBASIC13.98□□□□□ -0.17
VPS13CQ709C8 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 BNIP3P42-201ENST00000454982 569 ntBASIC13.98□□□□□ -0.17
VPS13CQ709C8 ELK1P1-201ENST00000485699 580 ntBASIC13.98□□□□□ -0.17
VPS13CQ709C8 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 BNIP3P29-201ENST00000598302 571 ntBASIC13.98□□□□□ -0.17
VPS13CQ709C8 AC011447.5-201ENST00000616168 564 ntBASIC13.98□□□□□ -0.17
VPS13CQ709C8 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS13CQ709C8 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13CQ709C8 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 AC131009.4-201ENST00000624048 1740 ntBASIC13.97□□□□□ -0.17
VPS13CQ709C8 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 IGHV3-52-201ENST00000519770 353 ntBASIC13.97□□□□□ -0.17
VPS13CQ709C8 RAB43P1-201ENST00000561790 589 ntBASIC13.97□□□□□ -0.17
VPS13CQ709C8 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.97□□□□□ -0.17
VPS13CQ709C8 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.97□□□□□ -0.17
VPS13CQ709C8 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13CQ709C8 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 AC092552.1-201ENST00000547243 906 ntBASIC13.97□□□□□ -0.17
VPS13CQ709C8 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
VPS13CQ709C8 CHCHD2P3-201ENST00000603038 451 ntBASIC13.97□□□□□ -0.17
VPS13CQ709C8 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 HCG4-201ENST00000418983 998 ntBASIC13.96□□□□□ -0.17
VPS13CQ709C8 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 AL109936.8-201ENST00000641772 604 ntBASIC13.96□□□□□ -0.17
VPS13CQ709C8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms