Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 PGM5P2-202ENST00000637225 1043 ntBASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 AC243591.1-201ENST00000452967 1364 ntBASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 PI4KAP1-204ENST00000612579 1703 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 AP002414.1-201ENST00000391405 1147 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 MRPL3P1-201ENST00000400109 1033 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 KRT18P27-201ENST00000427733 1299 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 AP001005.1-201ENST00000571755 1248 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 TERC-201ENST00000602385 541 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 AC005593.1-201ENST00000624894 515 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 AL805961.1-202ENST00000641562 540 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 NKILA-202ENST00000614771 2598 ntBASIC20.02■□□□□ 0.8
SYNE3Q6ZMZ3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SYNE3Q6ZMZ3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SYNE3Q6ZMZ3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 AC073621.1-201ENST00000392730 636 ntBASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 RPS15P9-201ENST00000494093 319 ntBASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 AL356488.2-201ENST00000602755 427 ntBASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 AL121894.2-201ENST00000602977 491 ntBASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 AF228730.7-201ENST00000641842 219 ntBASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE3Q6ZMZ3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 AC011676.5-201ENST00000624864 2660 ntBASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 NFIC-211ENST00000641145 8399 ntBASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 AC012640.2-201ENST00000561606 901 ntBASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms