Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC10.34□□□□□ -0.75
HSPG2P98160 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
HSPG2P98160 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC10.34□□□□□ -0.75
HSPG2P98160 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC10.34□□□□□ -0.75
HSPG2P98160 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
HSPG2P98160 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC10.34□□□□□ -0.75
HSPG2P98160 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 AL353705.2-201ENST00000428243 662 ntBASIC10.33□□□□□ -0.76
HSPG2P98160 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 AC068587.3-201ENST00000526613 355 ntBASIC10.33□□□□□ -0.76
HSPG2P98160 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 AC106872.11-201ENST00000605838 421 ntBASIC10.33□□□□□ -0.76
HSPG2P98160 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC10.33□□□□□ -0.76
HSPG2P98160 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC10.33□□□□□ -0.76
HSPG2P98160 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
HSPG2P98160 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC10.33□□□□□ -0.76
HSPG2P98160 AP001889.1-201ENST00000525414 633 ntBASIC10.33□□□□□ -0.76
HSPG2P98160 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 AC016629.1-201ENST00000596579 586 ntBASIC10.33□□□□□ -0.76
HSPG2P98160 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 REXO1L9P-201ENST00000604264 2108 ntBASIC10.33□□□□□ -0.76
HSPG2P98160 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC10.33□□□□□ -0.76
HSPG2P98160 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC10.33□□□□□ -0.76
HSPG2P98160 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC10.33□□□□□ -0.76
HSPG2P98160 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC10.33□□□□□ -0.76
HSPG2P98160 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC10.33□□□□□ -0.76
HSPG2P98160 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
HSPG2P98160 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
HSPG2P98160 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC10.33□□□□□ -0.76
HSPG2P98160 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
HSPG2P98160 OSM-203ENST00000403463 464 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 TMEM198B-204ENST00000484016 896 ntBASIC10.33□□□□□ -0.76
HSPG2P98160 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC10.33□□□□□ -0.76
HSPG2P98160 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC10.33□□□□□ -0.76
HSPG2P98160 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
HSPG2P98160 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC10.32□□□□□ -0.76
HSPG2P98160 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 NEU3-202ENST00000526068 431 ntTSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 AL118558.3-201ENST00000607414 1079 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 AL139327.4-201ENST00000612362 153 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 AC015967.2-201ENST00000624092 234 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 AC006435.4-201ENST00000625037 234 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 AL356737.1-201ENST00000634391 234 ntBASIC10.32□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms