Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC23.25■■□□□ 1.31
MSH6P52701 BNIP3P29-201ENST00000598302 571 ntBASIC23.25■■□□□ 1.31
MSH6P52701 AC011447.5-201ENST00000616168 564 ntBASIC23.25■■□□□ 1.31
MSH6P52701 AL109936.8-201ENST00000641772 604 ntBASIC23.25■■□□□ 1.31
MSH6P52701 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
MSH6P52701 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
MSH6P52701 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC23.24■■□□□ 1.31
MSH6P52701 AC131009.4-201ENST00000624048 1740 ntBASIC23.24■■□□□ 1.31
MSH6P52701 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC23.24■■□□□ 1.31
MSH6P52701 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC23.24■■□□□ 1.31
MSH6P52701 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC23.24■■□□□ 1.31
MSH6P52701 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC23.24■■□□□ 1.31
MSH6P52701 HAUS4P1-201ENST00000406739 1145 ntBASIC23.24■■□□□ 1.31
MSH6P52701 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH6P52701 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC23.24■■□□□ 1.31
MSH6P52701 CDK2AP2P3-201ENST00000422476 372 ntBASIC23.24■■□□□ 1.31
MSH6P52701 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC23.24■■□□□ 1.31
MSH6P52701 AL512361.1-201ENST00000554200 418 ntBASIC23.24■■□□□ 1.31
MSH6P52701 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC23.24■■□□□ 1.31
MSH6P52701 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC23.23■■□□□ 1.31
MSH6P52701 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
MSH6P52701 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
MSH6P52701 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC23.23■■□□□ 1.31
MSH6P52701 HARS-204ENST00000438307 1789 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
MSH6P52701 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC23.23■■□□□ 1.31
MSH6P52701 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC23.23■■□□□ 1.31
MSH6P52701 STARD13-205ENST00000439831 945 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC23.23■■□□□ 1.31
MSH6P52701 AC007389.4-201ENST00000454674 793 ntBASIC23.23■■□□□ 1.31
MSH6P52701 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
MSH6P52701 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 LINC01451-201ENST00000623792 534 ntBASIC23.23■■□□□ 1.31
MSH6P52701 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC23.23■■□□□ 1.31
MSH6P52701 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH6P52701 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
MSH6P52701 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC23.23■■□□□ 1.31
MSH6P52701 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC23.22■■□□□ 1.31
MSH6P52701 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
MSH6P52701 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC23.22■■□□□ 1.31
MSH6P52701 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC23.22■■□□□ 1.31
MSH6P52701 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
MSH6P52701 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
MSH6P52701 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC23.22■■□□□ 1.31
MSH6P52701 ACTBP11-201ENST00000436287 1126 ntBASIC23.22■■□□□ 1.31
MSH6P52701 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
MSH6P52701 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC23.22■■□□□ 1.31
MSH6P52701 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
MSH6P52701 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
MSH6P52701 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC23.21■■□□□ 1.31
MSH6P52701 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC23.21■■□□□ 1.31
MSH6P52701 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC23.21■■□□□ 1.31
MSH6P52701 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH6P52701 LINC00896-202ENST00000609602 2128 ntBASIC23.21■■□□□ 1.31
MSH6P52701 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH6P52701 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
MSH6P52701 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH6P52701 AC114501.2-201ENST00000439631 535 ntBASIC23.21■■□□□ 1.31
MSH6P52701 MYCLP2-201ENST00000449268 967 ntBASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms