Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.52■□□□□ 0.24
HNF4AP41235 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HNF4AP41235 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
HNF4AP41235 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.52■□□□□ 0.24
HNF4AP41235 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HNF4AP41235 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.52■□□□□ 0.24
HNF4AP41235 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 MTDHP4-201ENST00000600287 670 ntBASIC16.52■□□□□ 0.24
HNF4AP41235 AL121894.2-201ENST00000602977 491 ntBASIC16.52■□□□□ 0.24
HNF4AP41235 AL121912.1-201ENST00000603683 238 ntBASIC16.52■□□□□ 0.24
HNF4AP41235 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.52■□□□□ 0.24
HNF4AP41235 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HNF4AP41235 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.52■□□□□ 0.24
HNF4AP41235 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HNF4AP41235 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
HNF4AP41235 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
HNF4AP41235 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HNF4AP41235 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HNF4AP41235 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HNF4AP41235 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HNF4AP41235 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
HNF4AP41235 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.51■□□□□ 0.23
HNF4AP41235 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 TUBB8P12-201ENST00000308911 1335 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 TUBB7P-202ENST00000428444 1305 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 TUBB8P7-204ENST00000567960 1332 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.51■□□□□ 0.23
HNF4AP41235 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.51■□□□□ 0.23
HNF4AP41235 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.51■□□□□ 0.23
HNF4AP41235 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.51■□□□□ 0.23
HNF4AP41235 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.51■□□□□ 0.23
HNF4AP41235 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HNF4AP41235 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.51■□□□□ 0.23
HNF4AP41235 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.51■□□□□ 0.23
HNF4AP41235 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.51■□□□□ 0.23
HNF4AP41235 FAM197Y8-203ENST00000450145 560 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.51■□□□□ 0.23
HNF4AP41235 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.51■□□□□ 0.23
HNF4AP41235 AC021087.4-201ENST00000563761 564 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.51■□□□□ 0.23
HNF4AP41235 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.51■□□□□ 0.23
HNF4AP41235 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.51■□□□□ 0.23
HNF4AP41235 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.51■□□□□ 0.23
HNF4AP41235 AL353135.1-201ENST00000606729 504 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 AL031008.1-201ENST00000619963 541 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 TP73-AS1-207ENST00000624167 988 ntBASIC16.51■□□□□ 0.23
HNF4AP41235 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.51■□□□□ 0.23
HNF4AP41235 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.51■□□□□ 0.23
HNF4AP41235 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HNF4AP41235 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.5■□□□□ 0.23
HNF4AP41235 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 AC046158.3-201ENST00000624947 2558 ntBASIC16.5■□□□□ 0.23
HNF4AP41235 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms