Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 AC112482.1-201ENST00000492080 688 ntBASIC19.07■□□□□ 0.64
CIITAP33076 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.07■□□□□ 0.64
CIITAP33076 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.07■□□□□ 0.64
CIITAP33076 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.07■□□□□ 0.64
CIITAP33076 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CIITAP33076 AC092865.5-201ENST00000545435 363 ntBASIC19.07■□□□□ 0.64
CIITAP33076 CYP2A7P1-201ENST00000595391 815 ntBASIC19.07■□□□□ 0.64
CIITAP33076 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.07■□□□□ 0.64
CIITAP33076 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
CIITAP33076 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
CIITAP33076 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.07■□□□□ 0.64
CIITAP33076 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CIITAP33076 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CIITAP33076 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CIITAP33076 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CIITAP33076 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.06■□□□□ 0.64
CIITAP33076 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.06■□□□□ 0.64
CIITAP33076 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.06■□□□□ 0.64
CIITAP33076 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 MKNK2P1-201ENST00000437526 628 ntBASIC19.06■□□□□ 0.64
CIITAP33076 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.06■□□□□ 0.64
CIITAP33076 YBX1P5-201ENST00000509441 847 ntBASIC19.06■□□□□ 0.64
CIITAP33076 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.06■□□□□ 0.64
CIITAP33076 AP002490.2-201ENST00000524791 560 ntBASIC19.06■□□□□ 0.64
CIITAP33076 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.06■□□□□ 0.64
CIITAP33076 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.06■□□□□ 0.64
CIITAP33076 AP001350.2-201ENST00000625104 1094 ntBASIC19.06■□□□□ 0.64
CIITAP33076 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
CIITAP33076 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.06■□□□□ 0.64
CIITAP33076 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CIITAP33076 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CIITAP33076 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CIITAP33076 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CIITAP33076 AL645728.1-201ENST00000366221 2101 ntBASIC19.06■□□□□ 0.64
CIITAP33076 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CIITAP33076 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.05■□□□□ 0.64
CIITAP33076 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.05■□□□□ 0.64
CIITAP33076 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.05■□□□□ 0.64
CIITAP33076 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CIITAP33076 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CIITAP33076 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.05■□□□□ 0.64
CIITAP33076 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.05■□□□□ 0.64
CIITAP33076 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.05■□□□□ 0.64
CIITAP33076 MIR3909-201ENST00000579518 119 ntBASIC19.05■□□□□ 0.64
CIITAP33076 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.05■□□□□ 0.64
CIITAP33076 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.05■□□□□ 0.64
CIITAP33076 SNX33P1-201ENST00000592116 1762 ntBASIC19.05■□□□□ 0.64
CIITAP33076 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.05■□□□□ 0.64
CIITAP33076 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.05■□□□□ 0.64
CIITAP33076 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.05■□□□□ 0.64
CIITAP33076 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CIITAP33076 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CIITAP33076 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CIITAP33076 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.04■□□□□ 0.64
CIITAP33076 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CIITAP33076 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CIITAP33076 AC105020.1-201ENST00000435356 2205 ntBASIC19.04■□□□□ 0.64
CIITAP33076 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CIITAP33076 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CIITAP33076 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms