Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.35■□□□□ 0.37
VCANP13611 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.35■□□□□ 0.37
VCANP13611 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VCANP13611 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.35■□□□□ 0.37
VCANP13611 STK19B-204ENST00000512515 211 ntBASIC17.35■□□□□ 0.37
VCANP13611 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.35■□□□□ 0.37
VCANP13611 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.35■□□□□ 0.37
VCANP13611 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.35■□□□□ 0.37
VCANP13611 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.35■□□□□ 0.37
VCANP13611 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
VCANP13611 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VCANP13611 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
VCANP13611 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.35■□□□□ 0.37
VCANP13611 AC055876.2-201ENST00000531834 546 ntBASIC17.35■□□□□ 0.37
VCANP13611 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCANP13611 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.35■□□□□ 0.37
VCANP13611 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 RPL7P3-201ENST00000441388 714 ntBASIC17.34■□□□□ 0.37
VCANP13611 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.34■□□□□ 0.37
VCANP13611 WFDC1-204ENST00000613603 549 ntBASIC17.34■□□□□ 0.37
VCANP13611 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.34■□□□□ 0.37
VCANP13611 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.34■□□□□ 0.37
VCANP13611 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.34■□□□□ 0.37
VCANP13611 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 FAM86HP-204ENST00000513466 959 ntBASIC17.34■□□□□ 0.37
VCANP13611 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
VCANP13611 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.34■□□□□ 0.37
VCANP13611 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.34■□□□□ 0.37
VCANP13611 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.34■□□□□ 0.37
VCANP13611 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 AL589739.1-201ENST00000607720 493 ntBASIC17.34■□□□□ 0.37
VCANP13611 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCANP13611 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
VCANP13611 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.33■□□□□ 0.37
VCANP13611 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VCANP13611 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.33■□□□□ 0.37
VCANP13611 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
VCANP13611 RN7SL769P-201ENST00000469386 295 ntBASIC17.33■□□□□ 0.37
VCANP13611 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.33■□□□□ 0.37
VCANP13611 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
VCANP13611 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.33■□□□□ 0.37
VCANP13611 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.33■□□□□ 0.37
VCANP13611 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.33■□□□□ 0.36
VCANP13611 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCANP13611 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCANP13611 FAM21FP-201ENST00000426241 1131 ntBASIC17.33■□□□□ 0.36
VCANP13611 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.33■□□□□ 0.36
VCANP13611 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCANP13611 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCANP13611 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VCANP13611 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
VCANP13611 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.33■□□□□ 0.36
VCANP13611 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.32■□□□□ 0.36
VCANP13611 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.32■□□□□ 0.36
VCANP13611 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.32■□□□□ 0.36
VCANP13611 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.32■□□□□ 0.36
VCANP13611 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VCANP13611 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.32■□□□□ 0.36
VCANP13611 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.32■□□□□ 0.36
VCANP13611 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms