Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL6A3P12111 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 RN7SL720P-201ENST00000488178 304 ntBASIC17.43■□□□□ 0.38
COL6A3P12111 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC17.43■□□□□ 0.38
COL6A3P12111 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC17.43■□□□□ 0.38
COL6A3P12111 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.43■□□□□ 0.38
COL6A3P12111 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.42■□□□□ 0.38
COL6A3P12111 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL6A3P12111 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A3P12111 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
COL6A3P12111 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
COL6A3P12111 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.42■□□□□ 0.38
COL6A3P12111 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.42■□□□□ 0.38
COL6A3P12111 RRP7BP-205ENST00000566851 833 ntBASIC17.42■□□□□ 0.38
COL6A3P12111 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
COL6A3P12111 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 AP000997.3-201ENST00000623333 2250 ntBASIC17.42■□□□□ 0.38
COL6A3P12111 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A3P12111 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
COL6A3P12111 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.42■□□□□ 0.38
COL6A3P12111 FAM220BP-201ENST00000377689 816 ntBASIC17.42■□□□□ 0.38
COL6A3P12111 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.42■□□□□ 0.38
COL6A3P12111 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.42■□□□□ 0.38
COL6A3P12111 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A3P12111 IGHV3-52-201ENST00000519770 353 ntBASIC17.42■□□□□ 0.38
COL6A3P12111 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC17.42■□□□□ 0.38
COL6A3P12111 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.41■□□□□ 0.38
COL6A3P12111 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A3P12111 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.41■□□□□ 0.38
COL6A3P12111 SCARNA20.5-201ENST00000516991 142 ntBASIC17.41■□□□□ 0.38
COL6A3P12111 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A3P12111 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL6A3P12111 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A3P12111 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A3P12111 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL6A3P12111 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A3P12111 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.41■□□□□ 0.38
COL6A3P12111 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.41■□□□□ 0.38
COL6A3P12111 BX276092.7-203ENST00000637198 1536 ntBASIC17.41■□□□□ 0.38
COL6A3P12111 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL6A3P12111 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.41■□□□□ 0.38
COL6A3P12111 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A3P12111 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A3P12111 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A3P12111 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A3P12111 HIST2H2BC-201ENST00000498492 580 ntBASIC17.4■□□□□ 0.38
COL6A3P12111 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COL6A3P12111 MIR326-201ENST00000362220 95 ntBASIC17.4■□□□□ 0.38
COL6A3P12111 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A3P12111 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A3P12111 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A3P12111 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A3P12111 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
COL6A3P12111 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms