Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS4BO75351 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS4BO75351 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 AC125634.1-201ENST00000438758 1403 ntBASIC16.71■□□□□ 0.27
VPS4BO75351 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4BO75351 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
VPS4BO75351 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4BO75351 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS4BO75351 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.71■□□□□ 0.27
VPS4BO75351 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VPS4BO75351 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS4BO75351 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4BO75351 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
VPS4BO75351 TP73-AS1-207ENST00000624167 988 ntBASIC16.71■□□□□ 0.27
VPS4BO75351 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS4BO75351 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 ZNF259P1-201ENST00000407656 1365 ntBASIC16.71■□□□□ 0.27
VPS4BO75351 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 AL049757.1-201ENST00000616842 1596 ntBASIC16.71■□□□□ 0.27
VPS4BO75351 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 AC078925.2-201ENST00000624013 1973 ntBASIC16.71■□□□□ 0.27
VPS4BO75351 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4BO75351 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4BO75351 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.71■□□□□ 0.26
VPS4BO75351 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS4BO75351 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS4BO75351 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS4BO75351 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
VPS4BO75351 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS4BO75351 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VPS4BO75351 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 STK25P1-201ENST00000585406 838 ntBASIC16.7■□□□□ 0.26
VPS4BO75351 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS4BO75351 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS4BO75351 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4BO75351 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS4BO75351 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4BO75351 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4BO75351 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4BO75351 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.69■□□□□ 0.26
VPS4BO75351 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 AC092068.3-201ENST00000587894 2016 ntBASIC16.69■□□□□ 0.26
VPS4BO75351 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
VPS4BO75351 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4BO75351 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS4BO75351 POM121L3P-201ENST00000419331 1163 ntBASIC16.69■□□□□ 0.26
VPS4BO75351 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS4BO75351 RNA5SP419-201ENST00000515908 135 ntBASIC16.69■□□□□ 0.26
VPS4BO75351 AP002490.2-201ENST00000524791 560 ntBASIC16.69■□□□□ 0.26
VPS4BO75351 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS4BO75351 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4BO75351 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS4BO75351 AC011840.4-201ENST00000578471 627 ntBASIC16.69■□□□□ 0.26
VPS4BO75351 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS4BO75351 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4BO75351 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VPS4BO75351 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms