Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP4O75161 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC23.52■■□□□ 1.36
NPHP4O75161 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
NPHP4O75161 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
NPHP4O75161 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC23.52■■□□□ 1.36
NPHP4O75161 CTBP2P5-201ENST00000454986 1264 ntBASIC23.52■■□□□ 1.36
NPHP4O75161 FADS2-205ENST00000517839 469 ntTSL 3 BASIC23.52■■□□□ 1.36
NPHP4O75161 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC23.52■■□□□ 1.36
NPHP4O75161 ARL16-210ENST00000574938 751 ntTSL 2 BASIC23.52■■□□□ 1.36
NPHP4O75161 BTNL10-201ENST00000595971 695 ntBASIC23.52■■□□□ 1.36
NPHP4O75161 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC23.52■■□□□ 1.36
NPHP4O75161 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
NPHP4O75161 AL033527.5-201ENST00000641382 801 ntBASIC23.52■■□□□ 1.36
NPHP4O75161 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC23.52■■□□□ 1.36
NPHP4O75161 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP4O75161 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
NPHP4O75161 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC23.52■■□□□ 1.36
NPHP4O75161 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC23.52■■□□□ 1.36
NPHP4O75161 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC23.52■■□□□ 1.36
NPHP4O75161 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 APOC3-202ENST00000375345 604 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP4O75161 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 AC108725.1-201ENST00000495472 409 ntBASIC23.51■■□□□ 1.35
NPHP4O75161 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC23.51■■□□□ 1.35
NPHP4O75161 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP4O75161 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.51■■□□□ 1.35
NPHP4O75161 IMPDH1P4-201ENST00000445028 1534 ntBASIC23.51■■□□□ 1.35
NPHP4O75161 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
NPHP4O75161 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
NPHP4O75161 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC23.51■■□□□ 1.35
NPHP4O75161 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
NPHP4O75161 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP4O75161 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP4O75161 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.51■■□□□ 1.35
NPHP4O75161 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
NPHP4O75161 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 GOLGA2P4-201ENST00000441462 777 ntBASIC23.5■■□□□ 1.35
NPHP4O75161 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC23.5■■□□□ 1.35
NPHP4O75161 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC23.5■■□□□ 1.35
NPHP4O75161 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 AC092337.1-201ENST00000568699 1129 ntBASIC23.5■■□□□ 1.35
NPHP4O75161 AC233724.13-201ENST00000598383 410 ntBASIC23.5■■□□□ 1.35
NPHP4O75161 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
NPHP4O75161 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.5■■□□□ 1.35
NPHP4O75161 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
NPHP4O75161 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC23.5■■□□□ 1.35
NPHP4O75161 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC23.5■■□□□ 1.35
NPHP4O75161 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
NPHP4O75161 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP4O75161 NSL1-201ENST00000366976 722 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP4O75161 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC23.5■■□□□ 1.35
NPHP4O75161 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC23.5■■□□□ 1.35
NPHP4O75161 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC23.5■■□□□ 1.35
NPHP4O75161 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC23.5■■□□□ 1.35
NPHP4O75161 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC23.5■■□□□ 1.35
NPHP4O75161 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP4O75161 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP4O75161 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
NPHP4O75161 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP4O75161 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
NPHP4O75161 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP4O75161 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC23.49■■□□□ 1.35
NPHP4O75161 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
NPHP4O75161 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.49■■□□□ 1.35
NPHP4O75161 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP4O75161 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms