Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC148477.8-201ENST00000624298 468 ntBASIC16.17■□□□□ 0.18
PROM1O43490 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
PROM1O43490 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 AC011676.5-201ENST00000624864 2660 ntBASIC16.17■□□□□ 0.18
PROM1O43490 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PROM1O43490 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PROM1O43490 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
PROM1O43490 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PROM1O43490 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
PROM1O43490 RPS2P28-201ENST00000314255 741 ntBASIC16.16■□□□□ 0.18
PROM1O43490 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 AC073621.1-201ENST00000392730 636 ntBASIC16.16■□□□□ 0.18
PROM1O43490 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 PTCHD3P3-201ENST00000403073 906 ntBASIC16.16■□□□□ 0.18
PROM1O43490 KRT18P27-201ENST00000427733 1299 ntBASIC16.16■□□□□ 0.18
PROM1O43490 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.16■□□□□ 0.18
PROM1O43490 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.16■□□□□ 0.18
PROM1O43490 TERC-201ENST00000602385 541 ntBASIC16.16■□□□□ 0.18
PROM1O43490 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PROM1O43490 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.16■□□□□ 0.18
PROM1O43490 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PROM1O43490 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
PROM1O43490 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
PROM1O43490 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 AC243591.1-201ENST00000452967 1364 ntBASIC16.15■□□□□ 0.18
PROM1O43490 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.15■□□□□ 0.18
PROM1O43490 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 AL022342.1-201ENST00000400363 863 ntBASIC16.15■□□□□ 0.18
PROM1O43490 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.15■□□□□ 0.18
PROM1O43490 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.15■□□□□ 0.18
PROM1O43490 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.15■□□□□ 0.18
PROM1O43490 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.15■□□□□ 0.18
PROM1O43490 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
PROM1O43490 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.15■□□□□ 0.18
PROM1O43490 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 AC008735.5-201ENST00000623544 497 ntBASIC16.15■□□□□ 0.18
PROM1O43490 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PROM1O43490 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.15■□□□□ 0.18
PROM1O43490 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms