Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC28.63■■■□□ 2.17
CUX2O14529 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC28.63■■■□□ 2.17
CUX2O14529 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CUX2O14529 AC104306.2-201ENST00000451877 341 ntBASIC28.63■■■□□ 2.17
CUX2O14529 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC28.63■■■□□ 2.17
CUX2O14529 KRT18P34-201ENST00000488218 1270 ntBASIC28.63■■■□□ 2.17
CUX2O14529 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC28.63■■■□□ 2.17
CUX2O14529 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
CUX2O14529 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CUX2O14529 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CUX2O14529 KRT18P55-202ENST00000578578 1546 ntBASIC28.63■■■□□ 2.17
CUX2O14529 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CUX2O14529 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC28.63■■■□□ 2.17
CUX2O14529 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC28.62■■■□□ 2.17
CUX2O14529 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC28.62■■■□□ 2.17
CUX2O14529 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC28.62■■■□□ 2.17
CUX2O14529 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
CUX2O14529 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC28.62■■■□□ 2.17
CUX2O14529 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
CUX2O14529 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC28.62■■■□□ 2.17
CUX2O14529 PIGL-212ENST00000581006 554 ntTSL 4 BASIC28.62■■■□□ 2.17
CUX2O14529 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC28.62■■■□□ 2.17
CUX2O14529 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC28.62■■■□□ 2.17
CUX2O14529 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC28.62■■■□□ 2.17
CUX2O14529 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC28.62■■■□□ 2.17
CUX2O14529 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC28.62■■■□□ 2.17
CUX2O14529 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
CUX2O14529 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC28.61■■■□□ 2.17
CUX2O14529 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC28.61■■■□□ 2.17
CUX2O14529 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC28.61■■■□□ 2.17
CUX2O14529 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC28.61■■■□□ 2.17
CUX2O14529 USP49-202ENST00000373010 2446 ntTSL 5 BASIC28.61■■■□□ 2.17
CUX2O14529 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC28.61■■■□□ 2.17
CUX2O14529 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC28.61■■■□□ 2.17
CUX2O14529 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
CUX2O14529 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC28.61■■■□□ 2.17
CUX2O14529 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
CUX2O14529 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC28.61■■■□□ 2.17
CUX2O14529 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CUX2O14529 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
CUX2O14529 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC28.6■■■□□ 2.17
CUX2O14529 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC28.6■■■□□ 2.17
CUX2O14529 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC28.6■■■□□ 2.17
CUX2O14529 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CUX2O14529 KRT8P19-201ENST00000551916 1455 ntBASIC28.6■■■□□ 2.17
CUX2O14529 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CUX2O14529 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC28.6■■■□□ 2.17
CUX2O14529 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CUX2O14529 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC28.6■■■□□ 2.17
CUX2O14529 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
CUX2O14529 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC28.6■■■□□ 2.17
CUX2O14529 AC092978.1-202ENST00000637590 1327 ntBASIC28.6■■■□□ 2.17
CUX2O14529 STK4-201ENST00000372801 2038 ntTSL 2 BASIC28.6■■■□□ 2.17
CUX2O14529 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC28.6■■■□□ 2.17
CUX2O14529 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CUX2O14529 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC28.59■■■□□ 2.17
CUX2O14529 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC28.59■■■□□ 2.17
CUX2O14529 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC28.59■■■□□ 2.17
CUX2O14529 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 AL353732.1-201ENST00000569618 1459 ntBASIC28.59■■■□□ 2.17
CUX2O14529 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC28.59■■■□□ 2.17
CUX2O14529 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC28.59■■■□□ 2.17
CUX2O14529 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
CUX2O14529 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 AC105021.1-202ENST00000570572 669 ntBASIC28.59■■■□□ 2.17
CUX2O14529 MIR5572-201ENST00000583188 137 ntBASIC28.59■■■□□ 2.17
CUX2O14529 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CUX2O14529 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
CUX2O14529 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CUX2O14529 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
CUX2O14529 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
CUX2O14529 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
CUX2O14529 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CUX2O14529 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC28.58■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms