Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 AL512638.1-201ENST00000457493 794 ntBASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 LY6E-204ENST00000519546 971 ntTSL 2 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 ALG1L8P-201ENST00000533887 760 ntBASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 TPR-209ENST00000613151 2478 ntTSL 5 BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 AC073592.8-201ENST00000624126 511 ntBASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC32.05■■■□□ 2.72
SHROOM4Q9ULL8 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 AL132655.2-201ENST00000596276 594 ntBASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 AL133373.2-201ENST00000623187 2828 ntBASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM4Q9ULL8 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 AL009183.1-201ENST00000603760 355 ntBASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC32.03■■■□□ 2.72
SHROOM4Q9ULL8 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 BOC-212ENST00000485230 2173 ntTSL 2 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
SHROOM4Q9ULL8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
SHROOM4Q9ULL8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC32.01■■■□□ 2.72
SHROOM4Q9ULL8 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
SHROOM4Q9ULL8 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 HILS1-202ENST00000545329 423 ntBASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 EGFEM1P-202ENST00000431685 1563 ntBASIC32.01■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms