Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 AL031432.2-201ENST00000566714 459 ntBASIC18.12■□□□□ 0.49
SIX4Q9UIU6 AL928711.1-201ENST00000570165 459 ntBASIC18.12■□□□□ 0.49
SIX4Q9UIU6 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.12■□□□□ 0.49
SIX4Q9UIU6 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 AC006277.1-201ENST00000624348 1610 ntBASIC18.12■□□□□ 0.49
SIX4Q9UIU6 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 HCG4-201ENST00000418983 998 ntBASIC18.11■□□□□ 0.49
SIX4Q9UIU6 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 AC092865.5-201ENST00000545435 363 ntBASIC18.11■□□□□ 0.49
SIX4Q9UIU6 AP002472.1-201ENST00000577490 586 ntBASIC18.11■□□□□ 0.49
SIX4Q9UIU6 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 CYP2A7P1-201ENST00000595391 815 ntBASIC18.11■□□□□ 0.49
SIX4Q9UIU6 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 AC013467.2-201ENST00000605472 835 ntBASIC18.11■□□□□ 0.49
SIX4Q9UIU6 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 SNX33P1-201ENST00000592116 1762 ntBASIC18.11■□□□□ 0.49
SIX4Q9UIU6 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX4Q9UIU6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 ALG1L5P-201ENST00000482043 771 ntBASIC18.1■□□□□ 0.49
SIX4Q9UIU6 AC087641.1-201ENST00000557561 1021 ntBASIC18.1■□□□□ 0.49
SIX4Q9UIU6 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 AC010327.4-202ENST00000591484 748 ntBASIC18.1■□□□□ 0.49
SIX4Q9UIU6 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.1■□□□□ 0.49
SIX4Q9UIU6 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 RNF216P1-203ENST00000404404 2427 ntBASIC18.1■□□□□ 0.49
SIX4Q9UIU6 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX4Q9UIU6 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SIX4Q9UIU6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms