Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AC092183.1-201ENST00000469884 875 ntBASIC18.24■□□□□ 0.51
CNTN3Q9P232 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CNTN3Q9P232 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTN3Q9P232 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 AC254562.1-201ENST00000417586 456 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 RPS8P6-201ENST00000426177 609 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 ADH5P3-201ENST00000433842 1137 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 AC099522.2-201ENST00000607001 744 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 AC131009.4-201ENST00000624048 1740 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 BCL2-203ENST00000589955 5011 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 TUBB8P12-201ENST00000308911 1335 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 TUBB7P-202ENST00000428444 1305 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 TUBB8P7-204ENST00000567960 1332 ntBASIC18.23■□□□□ 0.51
CNTN3Q9P232 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CNTN3Q9P232 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTN3Q9P232 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 AC087641.1-201ENST00000557561 1021 ntBASIC18.22■□□□□ 0.51
CNTN3Q9P232 MIR4492-201ENST00000581627 80 ntBASIC18.22■□□□□ 0.51
CNTN3Q9P232 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNTN3Q9P232 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CNTN3Q9P232 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNTN3Q9P232 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNTN3Q9P232 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
CNTN3Q9P232 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNTN3Q9P232 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.21■□□□□ 0.51
CNTN3Q9P232 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CNTN3Q9P232 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CNTN3Q9P232 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms