Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 INGX-202ENST00000489074 768 ntBASIC17.24■□□□□ 0.35
CHFRQ96EP1 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.24■□□□□ 0.35
CHFRQ96EP1 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 SLC25A39P2-201ENST00000537614 270 ntBASIC17.24■□□□□ 0.35
CHFRQ96EP1 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 KRT8P23-201ENST00000560090 1207 ntBASIC17.24■□□□□ 0.35
CHFRQ96EP1 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 AC020916.1-201ENST00000587762 1774 ntBASIC17.24■□□□□ 0.35
CHFRQ96EP1 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 WASH6P-202ENST00000359512 1437 ntBASIC17.23■□□□□ 0.35
CHFRQ96EP1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 PMS2P4-201ENST00000412466 1052 ntBASIC17.23■□□□□ 0.35
CHFRQ96EP1 AC107890.1-201ENST00000422478 521 ntBASIC17.23■□□□□ 0.35
CHFRQ96EP1 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 AC005332.8-201ENST00000622750 2735 ntBASIC17.23■□□□□ 0.35
CHFRQ96EP1 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHFRQ96EP1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CHFRQ96EP1 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHFRQ96EP1 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 MIR346-201ENST00000362234 95 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHFRQ96EP1 AC236430.1-201ENST00000402231 743 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 TREML5P-201ENST00000421694 576 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 AC002472.2-201ENST00000442739 958 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 AC125807.1-201ENST00000483097 614 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 AP000842.3-202ENST00000569238 1080 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 RN7SL204P-201ENST00000582831 262 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 AL031055.1-201ENST00000606362 631 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 TOP3BP1-201ENST00000420768 1380 ntBASIC17.22■□□□□ 0.35
CHFRQ96EP1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHFRQ96EP1 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHFRQ96EP1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CHFRQ96EP1 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHFRQ96EP1 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHFRQ96EP1 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms