Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 AL645728.1-201ENST00000366221 2101 ntBASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
NUDCD3Q8IVD9 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 Z83836.1-201ENST00000624605 1642 ntBASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 AC145285.6-201ENST00000604632 637 ntBASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUDCD3Q8IVD9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 AC125634.1-201ENST00000438758 1403 ntBASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.96■□□□□ 0.3
NUDCD3Q8IVD9 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 HBZP1-201ENST00000354915 429 ntBASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 AC010203.1-204ENST00000548782 407 ntBASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUDCD3Q8IVD9 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
NUDCD3Q8IVD9 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUDCD3Q8IVD9 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.94■□□□□ 0.3
NUDCD3Q8IVD9 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUDCD3Q8IVD9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.94■□□□□ 0.3
NUDCD3Q8IVD9 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.94■□□□□ 0.3
NUDCD3Q8IVD9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUDCD3Q8IVD9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms