Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTR9Q6PD62 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.17■□□□□ 0.82
CTR9Q6PD62 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTR9Q6PD62 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.17■□□□□ 0.82
CTR9Q6PD62 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTR9Q6PD62 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTR9Q6PD62 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 AL023806.1-201ENST00000603994 1649 ntBASIC20.16■□□□□ 0.82
CTR9Q6PD62 AC092919.2-201ENST00000623631 1645 ntBASIC20.16■□□□□ 0.82
CTR9Q6PD62 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 AL645608.8-201ENST00000606034 2086 ntBASIC20.16■□□□□ 0.82
CTR9Q6PD62 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 AC005829.1-201ENST00000570002 483 ntBASIC20.16■□□□□ 0.82
CTR9Q6PD62 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 AL078644.1-201ENST00000609881 752 ntBASIC20.16■□□□□ 0.82
CTR9Q6PD62 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CTR9Q6PD62 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CTR9Q6PD62 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 YBX1P5-201ENST00000509441 847 ntBASIC20.15■□□□□ 0.82
CTR9Q6PD62 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 TOP3BP1-201ENST00000420768 1380 ntBASIC20.15■□□□□ 0.82
CTR9Q6PD62 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CTR9Q6PD62 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.15■□□□□ 0.82
CTR9Q6PD62 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTR9Q6PD62 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTR9Q6PD62 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.14■□□□□ 0.82
CTR9Q6PD62 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CTR9Q6PD62 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTR9Q6PD62 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CTR9Q6PD62 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTR9Q6PD62 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CTR9Q6PD62 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms