Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.62□□□□□ -0.07
ABCA4P78363 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC14.62□□□□□ -0.07
ABCA4P78363 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
ABCA4P78363 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.62□□□□□ -0.07
ABCA4P78363 MIR4515-201ENST00000584082 81 ntBASIC14.62□□□□□ -0.07
ABCA4P78363 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
ABCA4P78363 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
ABCA4P78363 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.61□□□□□ -0.07
ABCA4P78363 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.61□□□□□ -0.07
ABCA4P78363 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 AL645728.2-201ENST00000641974 660 ntBASIC14.61□□□□□ -0.07
ABCA4P78363 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 UXT-AS1-201ENST00000590504 1525 ntBASIC14.61□□□□□ -0.07
ABCA4P78363 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.61□□□□□ -0.07
ABCA4P78363 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
ABCA4P78363 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.61□□□□□ -0.07
ABCA4P78363 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.61□□□□□ -0.07
ABCA4P78363 AC092580.3-201ENST00000430932 139 ntBASIC14.61□□□□□ -0.07
ABCA4P78363 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.61□□□□□ -0.07
ABCA4P78363 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
ABCA4P78363 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
ABCA4P78363 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ABCA4P78363 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.6□□□□□ -0.07
ABCA4P78363 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
ABCA4P78363 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
ABCA4P78363 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.6□□□□□ -0.07
ABCA4P78363 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.6□□□□□ -0.07
ABCA4P78363 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
ABCA4P78363 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.6□□□□□ -0.07
ABCA4P78363 AC025048.6-201ENST00000634326 1161 ntBASIC14.6□□□□□ -0.07
ABCA4P78363 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms