Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.18■□□□□ 0.66
USP11P51784 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 AC013467.2-201ENST00000605472 835 ntBASIC19.18■□□□□ 0.66
USP11P51784 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.18■□□□□ 0.66
USP11P51784 AC092865.6-201ENST00000642101 219 ntBASIC19.18■□□□□ 0.66
USP11P51784 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 BCAR1-209ENST00000546196 1340 ntBASIC19.18■□□□□ 0.66
USP11P51784 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 AC009053.2-201ENST00000563701 2365 ntBASIC19.18■□□□□ 0.66
USP11P51784 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP11P51784 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.17■□□□□ 0.66
USP11P51784 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.17■□□□□ 0.66
USP11P51784 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP11P51784 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.17■□□□□ 0.66
USP11P51784 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.17■□□□□ 0.66
USP11P51784 AC004832.2-201ENST00000426397 482 ntBASIC19.17■□□□□ 0.66
USP11P51784 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.17■□□□□ 0.66
USP11P51784 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.17■□□□□ 0.66
USP11P51784 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.17■□□□□ 0.66
USP11P51784 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.17■□□□□ 0.66
USP11P51784 AL031432.2-201ENST00000566714 459 ntBASIC19.17■□□□□ 0.66
USP11P51784 AL928711.1-201ENST00000570165 459 ntBASIC19.17■□□□□ 0.66
USP11P51784 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.17■□□□□ 0.66
USP11P51784 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.17■□□□□ 0.66
USP11P51784 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP11P51784 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 LINC00895-201ENST00000629028 1637 ntBASIC19.17■□□□□ 0.66
USP11P51784 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP11P51784 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.17■□□□□ 0.66
USP11P51784 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.17■□□□□ 0.66
USP11P51784 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP11P51784 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 AC012569.1-201ENST00000591191 1524 ntBASIC19.16■□□□□ 0.66
USP11P51784 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP11P51784 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
USP11P51784 AC012313.1-201ENST00000593393 3059 ntBASIC19.16■□□□□ 0.66
USP11P51784 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.16■□□□□ 0.66
USP11P51784 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
USP11P51784 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.16■□□□□ 0.66
USP11P51784 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.16■□□□□ 0.66
USP11P51784 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.16■□□□□ 0.66
USP11P51784 PDPK2P-202ENST00000562415 1191 ntBASIC19.16■□□□□ 0.66
USP11P51784 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.16■□□□□ 0.66
USP11P51784 AL513190.1-201ENST00000621254 727 ntBASIC19.16■□□□□ 0.66
USP11P51784 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.16■□□□□ 0.66
USP11P51784 AC138932.1-201ENST00000534164 6830 ntBASIC19.16■□□□□ 0.66
USP11P51784 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.16■□□□□ 0.66
USP11P51784 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP11P51784 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP11P51784 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.16■□□□□ 0.66
USP11P51784 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP11P51784 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.15■□□□□ 0.66
USP11P51784 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
USP11P51784 AC006277.1-201ENST00000624348 1610 ntBASIC19.15■□□□□ 0.66
USP11P51784 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.15■□□□□ 0.66
USP11P51784 AC106820.2-201ENST00000563775 3264 ntBASIC19.15■□□□□ 0.66
USP11P51784 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
USP11P51784 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 AC023274.1-201ENST00000418278 595 ntBASIC19.15■□□□□ 0.66
USP11P51784 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.15■□□□□ 0.66
USP11P51784 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.15■□□□□ 0.66
USP11P51784 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.15■□□□□ 0.66
USP11P51784 AC087641.1-201ENST00000557561 1021 ntBASIC19.15■□□□□ 0.66
USP11P51784 AC002347.1-201ENST00000569543 541 ntBASIC19.15■□□□□ 0.66
USP11P51784 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USP11P51784 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.15■□□□□ 0.66
USP11P51784 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP11P51784 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms