Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.35■□□□□ 0.85
BRCA1P38398 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 AC061975.2-201ENST00000581722 295 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.35■□□□□ 0.85
BRCA1P38398 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 AL139099.5-201ENST00000635274 300 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.35■□□□□ 0.85
BRCA1P38398 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 SLC25A24-204ENST00000569674 2357 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 CLK3P2-201ENST00000427566 1453 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.35■□□□□ 0.85
BRCA1P38398 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
BRCA1P38398 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20.35■□□□□ 0.85
BRCA1P38398 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 HAUS4P1-201ENST00000406739 1145 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 AC099336.1-201ENST00000417053 1171 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 ACTBP11-201ENST00000436287 1126 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.35■□□□□ 0.85
BRCA1P38398 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC20.35■□□□□ 0.85
BRCA1P38398 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 AL583810.1-201ENST00000553344 1045 ntBASIC20.35■□□□□ 0.85
BRCA1P38398 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
BRCA1P38398 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.34■□□□□ 0.85
BRCA1P38398 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.34■□□□□ 0.85
BRCA1P38398 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.34■□□□□ 0.85
BRCA1P38398 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.34■□□□□ 0.85
BRCA1P38398 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
BRCA1P38398 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC20.34■□□□□ 0.85
BRCA1P38398 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.34■□□□□ 0.85
BRCA1P38398 TMEM261P1-201ENST00000604899 340 ntBASIC20.34■□□□□ 0.85
BRCA1P38398 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC20.34■□□□□ 0.85
BRCA1P38398 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC20.34■□□□□ 0.85
BRCA1P38398 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.34■□□□□ 0.85
BRCA1P38398 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.34■□□□□ 0.85
BRCA1P38398 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BRCA1P38398 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
BRCA1P38398 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
BRCA1P38398 SERBP1P3-201ENST00000459980 809 ntBASIC20.33■□□□□ 0.85
BRCA1P38398 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.33■□□□□ 0.85
BRCA1P38398 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BRCA1P38398 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BRCA1P38398 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.33■□□□□ 0.85
BRCA1P38398 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.33■□□□□ 0.85
BRCA1P38398 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.33■□□□□ 0.84
BRCA1P38398 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRCA1P38398 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRCA1P38398 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRCA1P38398 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
BRCA1P38398 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRCA1P38398 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
BRCA1P38398 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.33■□□□□ 0.84
BRCA1P38398 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
BRCA1P38398 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC20.33■□□□□ 0.84
BRCA1P38398 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.33■□□□□ 0.84
BRCA1P38398 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
BRCA1P38398 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.84
BRCA1P38398 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.84
BRCA1P38398 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
BRCA1P38398 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.32■□□□□ 0.84
BRCA1P38398 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.32■□□□□ 0.84
BRCA1P38398 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.32■□□□□ 0.84
BRCA1P38398 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC20.32■□□□□ 0.84
BRCA1P38398 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC20.32■□□□□ 0.84
BRCA1P38398 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
BRCA1P38398 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms