Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.65■□□□□ 0.26
PCNAP12004 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCNAP12004 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
PCNAP12004 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCNAP12004 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCNAP12004 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.65■□□□□ 0.26
PCNAP12004 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCNAP12004 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
PCNAP12004 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCNAP12004 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCNAP12004 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.65■□□□□ 0.26
PCNAP12004 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
PCNAP12004 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
PCNAP12004 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PCNAP12004 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PCNAP12004 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
PCNAP12004 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
PCNAP12004 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.64■□□□□ 0.25
PCNAP12004 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.64■□□□□ 0.25
PCNAP12004 CICP6-201ENST00000457191 2729 ntBASIC16.64■□□□□ 0.25
PCNAP12004 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PCNAP12004 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
PCNAP12004 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PCNAP12004 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 AC132008.2-207ENST00000454517 770 ntBASIC16.64■□□□□ 0.25
PCNAP12004 SIGLEC30P-201ENST00000455569 941 ntBASIC16.64■□□□□ 0.25
PCNAP12004 PRELID1P1-202ENST00000567272 903 ntBASIC16.64■□□□□ 0.25
PCNAP12004 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.64■□□□□ 0.25
PCNAP12004 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PCNAP12004 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.64■□□□□ 0.25
PCNAP12004 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.64■□□□□ 0.25
PCNAP12004 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
PCNAP12004 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCNAP12004 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PCNAP12004 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
PCNAP12004 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
PCNAP12004 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.63■□□□□ 0.25
PCNAP12004 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.63■□□□□ 0.25
PCNAP12004 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.63■□□□□ 0.25
PCNAP12004 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PCNAP12004 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 AC046158.3-201ENST00000624947 2558 ntBASIC16.63■□□□□ 0.25
PCNAP12004 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.63■□□□□ 0.25
PCNAP12004 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.63■□□□□ 0.25
PCNAP12004 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCNAP12004 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
PCNAP12004 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
PCNAP12004 AC092053.1-201ENST00000605787 1936 ntBASIC16.62■□□□□ 0.25
PCNAP12004 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms