Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.16■□□□□ 0.02
CNOT4O95628 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CNOT4O95628 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CNOT4O95628 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CNOT4O95628 PTCHD3P3-201ENST00000403073 906 ntBASIC15.16■□□□□ 0.02
CNOT4O95628 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.16■□□□□ 0.02
CNOT4O95628 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.16■□□□□ 0.02
CNOT4O95628 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.16■□□□□ 0.02
CNOT4O95628 AC010327.4-202ENST00000591484 748 ntBASIC15.16■□□□□ 0.02
CNOT4O95628 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CNOT4O95628 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.15■□□□□ 0.02
CNOT4O95628 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CNOT4O95628 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CNOT4O95628 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
CNOT4O95628 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.15■□□□□ 0.02
CNOT4O95628 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.15■□□□□ 0.02
CNOT4O95628 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.15■□□□□ 0.02
CNOT4O95628 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.15■□□□□ 0.02
CNOT4O95628 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
CNOT4O95628 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.15■□□□□ 0.02
CNOT4O95628 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.15■□□□□ 0.02
CNOT4O95628 MIR3687-2-201ENST00000577708 61 ntBASIC15.15■□□□□ 0.02
CNOT4O95628 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CNOT4O95628 LINC00896-202ENST00000609602 2128 ntBASIC15.15■□□□□ 0.02
CNOT4O95628 MIR3687-1-201ENST00000614492 61 ntBASIC15.15■□□□□ 0.02
CNOT4O95628 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CNOT4O95628 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
CNOT4O95628 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.15■□□□□ 0.02
CNOT4O95628 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.15■□□□□ 0.02
CNOT4O95628 PRORSD1P-202ENST00000563365 2154 ntBASIC15.15■□□□□ 0.02
CNOT4O95628 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.15■□□□□ 0.02
CNOT4O95628 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CNOT4O95628 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.14■□□□□ 0.01
CNOT4O95628 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 MRPL20P1-201ENST00000400819 433 ntBASIC15.14■□□□□ 0.01
CNOT4O95628 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.14■□□□□ 0.01
CNOT4O95628 RPS8P6-201ENST00000426177 609 ntBASIC15.14■□□□□ 0.01
CNOT4O95628 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.14■□□□□ 0.01
CNOT4O95628 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.14■□□□□ 0.01
CNOT4O95628 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.14■□□□□ 0.01
CNOT4O95628 AC010654.1-201ENST00000615722 808 ntBASIC15.14■□□□□ 0.01
CNOT4O95628 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.14■□□□□ 0.01
CNOT4O95628 AC079781.4-201ENST00000641908 219 ntBASIC15.14■□□□□ 0.01
CNOT4O95628 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.14■□□□□ 0.01
CNOT4O95628 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.14■□□□□ 0.01
CNOT4O95628 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CNOT4O95628 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
CNOT4O95628 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CNOT4O95628 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
CNOT4O95628 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CNOT4O95628 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CNOT4O95628 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CNOT4O95628 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms