Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 RHOQP3-201ENST00000437982 621 ntBASIC17.95■□□□□ 0.46
RTN3O95197 SLC25A6P2-201ENST00000497974 877 ntBASIC17.95■□□□□ 0.46
RTN3O95197 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.95■□□□□ 0.46
RTN3O95197 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.95■□□□□ 0.46
RTN3O95197 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.95■□□□□ 0.46
RTN3O95197 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.95■□□□□ 0.46
RTN3O95197 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.95■□□□□ 0.46
RTN3O95197 AC006538.3-201ENST00000612495 578 ntBASIC17.95■□□□□ 0.46
RTN3O95197 AC007064.4-201ENST00000637740 555 ntBASIC17.95■□□□□ 0.46
RTN3O95197 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.95■□□□□ 0.46
RTN3O95197 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RTN3O95197 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
RTN3O95197 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.95■□□□□ 0.46
RTN3O95197 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
RTN3O95197 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTN3O95197 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
RTN3O95197 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.94■□□□□ 0.46
RTN3O95197 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
RTN3O95197 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.94■□□□□ 0.46
RTN3O95197 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.94■□□□□ 0.46
RTN3O95197 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.94■□□□□ 0.46
RTN3O95197 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 MIR3687-2-201ENST00000577708 61 ntBASIC17.94■□□□□ 0.46
RTN3O95197 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.94■□□□□ 0.46
RTN3O95197 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.94■□□□□ 0.46
RTN3O95197 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
RTN3O95197 MIR3687-1-201ENST00000614492 61 ntBASIC17.94■□□□□ 0.46
RTN3O95197 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.94■□□□□ 0.46
RTN3O95197 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
RTN3O95197 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTN3O95197 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.93■□□□□ 0.46
RTN3O95197 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
RTN3O95197 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.93■□□□□ 0.46
RTN3O95197 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
RTN3O95197 AC116353.5-201ENST00000638148 1699 ntBASIC17.93■□□□□ 0.46
RTN3O95197 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.93■□□□□ 0.46
RTN3O95197 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
RTN3O95197 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 MIR1233-2-201ENST00000408138 82 ntBASIC17.93■□□□□ 0.46
RTN3O95197 MIR1233-1-201ENST00000408722 82 ntBASIC17.93■□□□□ 0.46
RTN3O95197 UPF3AP3-201ENST00000420996 769 ntBASIC17.93■□□□□ 0.46
RTN3O95197 MCCD1P2-201ENST00000423228 335 ntBASIC17.93■□□□□ 0.46
RTN3O95197 FAM185BP-201ENST00000443595 716 ntBASIC17.93■□□□□ 0.46
RTN3O95197 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.93■□□□□ 0.46
RTN3O95197 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.93■□□□□ 0.46
RTN3O95197 AC004877.2-201ENST00000623941 599 ntBASIC17.93■□□□□ 0.46
RTN3O95197 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
RTN3O95197 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
RTN3O95197 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
RTN3O95197 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.93■□□□□ 0.46
RTN3O95197 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.93■□□□□ 0.46
RTN3O95197 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RTN3O95197 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
RTN3O95197 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.92■□□□□ 0.46
RTN3O95197 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.92■□□□□ 0.46
RTN3O95197 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RTN3O95197 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RTN3O95197 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RTN3O95197 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RTN3O95197 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RTN3O95197 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms